PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010087144.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

Trihelix

Protein Properties

Length: 511aa MW: 58224 Da PI: 6.2778

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010087144.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	84.9	1e-26	118	215	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyf 82 +Wt+++v++Li+a+++++e+ ++++ +kk++W++vsk+m+erg+++sp+qC++k+++lnkryk+++++ +++ +++++++ +++ XP_010087144.1 118 KWTDKMVKLLITAVSYIGEDAGSDCgagggrrkfailQKKGKWKSVSKVMAERGYHVSPQQCEDKFNDLNKRYKRLNDMLGRGtSCQVVENPALL 212 7*******************998889999999*********************************************569999888887 PP trihelix 83 dql 85 d + XP_010087144.1 213 DVI 215 765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.6E-23	116	242	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 511 aa Download sequence Send to blast
MEGHLSQGGM IPGGTSSSSY GIGGLDLQGS MRSHHHQHHH QGQHPHSIHP HQCPSSSVHE 60 IGSLHNCDHA ISLADYNKGA ERSKNSATAS EEDEPSFTEE GVDGHNEVNR GKPWQRVKWT 120 DKMVKLLITA VSYIGEDAGS DCGAGGGRRK FAILQKKGKW KSVSKVMAER GYHVSPQQCE 180 DKFNDLNKRY KRLNDMLGRG TSCQVVENPA LLDVIDYLTE KEKDDVRKIL SSKHLFYEEM 240 CSYHNGNRLH LPHDLALQRS LQLALRSRDD HDNEELRKVH QDDDLDEDDP DAETDDHDRD 300 DLEDNNINAS SHGDRGMYGI LVEPGKRFRQ SQGGEDVGFG SSLSVQDCNK SCYSQPQVQQ 360 LGQTDMNHAP PDGTRVAWLQ KQWIESRSLQ LEERKLQIQV EMLELERQRL KWQRFTKKRD 420 RELEKLRMEN VRMKLENERM ALELKREEIG LFVSLTEWQL MSIFISMFCL RCSRLYDYDY 480 VSGRPKTPLI AASESDITSS AEIAVCSFIL V

Sequence ? help Back to Top

Protein Sequence Length: 511 aa Download sequence Send to blast

MEGHLSQGGM IPGGTSSSSY GIGGLDLQGS MRSHHHQHHH QGQHPHSIHP HQCPSSSVHE  60
IGSLHNCDHA ISLADYNKGA ERSKNSATAS EEDEPSFTEE GVDGHNEVNR GKPWQRVKWT  120
DKMVKLLITA VSYIGEDAGS DCGAGGGRRK FAILQKKGKW KSVSKVMAER GYHVSPQQCE  180
DKFNDLNKRY KRLNDMLGRG TSCQVVENPA LLDVIDYLTE KEKDDVRKIL SSKHLFYEEM  240
CSYHNGNRLH LPHDLALQRS LQLALRSRDD HDNEELRKVH QDDDLDEDDP DAETDDHDRD  300
DLEDNNINAS SHGDRGMYGI LVEPGKRFRQ SQGGEDVGFG SSLSVQDCNK SCYSQPQVQQ  360
LGQTDMNHAP PDGTRVAWLQ KQWIESRSLQ LEERKLQIQV EMLELERQRL KWQRFTKKRD  420
RELEKLRMEN VRMKLENERM ALELKREEIG LFVSLTEWQL MSIFISMFCL RCSRLYDYDY  480
VSGRPKTPLI AASESDITSS AEIAVCSFIL V

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010087144.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024018948.1	0.0	uncharacterized protein LOC21390793
TrEMBL	W9QM75	0.0	W9QM75_9ROSA; Uncharacterized protein
STRING	XP_010087144.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5001	31	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-144	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Entrez Gene	21390793