PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010086870.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | LBD | ||||||||
Protein Properties | Length: 252aa MW: 27518.2 Da PI: 7.968 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 127.6 | 5.8e-40 | 9 | 108 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrrkC+++Cv+apyfp +qp+kfa vhk++Gasnv k+l++l +re+a+ sl+yeAear+rdPv G+vg+i+ l+++l+q +ae++ XP_010086870.1 9 PCAACKFLRRKCTQECVFAPYFPPDQPQKFASVHKVYGASNVAKILNELTVVHREEAAISLAYEAEARLRDPVFGCVGFITILHNRLKQIQAEVH 103 7********************************************************************************************** PP DUF260 96 llkee 100 + k+e XP_010086870.1 104 ASKKE 108 99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.359 | 8 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.6E-39 | 9 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MASSSSHSPC AACKFLRRKC TQECVFAPYF PPDQPQKFAS VHKVYGASNV AKILNELTVV 60 HREEAAISLA YEAEARLRDP VFGCVGFITI LHNRLKQIQA EVHASKKELA TYIGPQAMMV 120 MMPPPPSYGM APPPPPTLGI QPTNNASAQL LIREPMNAQQ YHHHQQQMFN SGFDHVPPVS 180 GGFSNQMNGG GRGSPSGGVV SPSLGLGGFD NVPNYHIQSQ QQQVHPPPLD YQLQTQLIIS 240 SQQKSEGDHQ QN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-43 | 8 | 112 | 10 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-43 | 8 | 112 | 10 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269|PubMed:12787254, ECO:0000269|PubMed:15821980}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010086870.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010086870.1 | 0.0 | LOB domain-containing protein 6 | ||||
Swissprot | Q9FKZ3 | 1e-62 | LBD36_ARATH; LOB domain-containing protein 36 | ||||
TrEMBL | W9QIY4 | 0.0 | W9QIY4_9ROSA; Uncharacterized protein | ||||
STRING | XP_010086870.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2353 | 34 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66870.1 | 8e-58 | ASYMMETRIC LEAVES 2-like 1 |
Link Out ? help Back to Top | |
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Entrez Gene | 21388758 |
Publications ? help Back to Top | |||
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