PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013906665.1
Organism
Monoraphidium neglectum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
Family bZIP
Protein Properties Length: 425aa    MW: 42390.8 Da    PI: 8.7484
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013906665.1genomeBUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1322.6e-10254312361
                     XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 
                     e++r rr+q+NRe+ArrsR+RK++ ++ Le+  + + a+  +   +++e +  +a l++
  XP_013906665.1 254 EVRRMRRMQSNRESARRSRKRKQEHLQTLEQQLDDMAAKAAEANARAQEAERRCADLEA 312
                     789***********************************999999999999999998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.5E-8252316IPR004827Basic-leucine zipper domain
PfamPF001704.4E-8253311IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.185254317IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.75E-8255311No hitNo description
Gene3DG3DSA:1.20.5.1701.2E-7256314No hitNo description
CDDcd147022.50E-9257308No hitNo description
PROSITE patternPS000360259274IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MERSFSVDDL VGGLYRLGQA GMGRTDSEAA FQEFLKRIPS ATNLAAAANA SSAAAAAAAA  60
AEAAPALPIS TSGSFSGAAE AAPLSAGGGA GGRMPRVASL DLLAKLVMQG ASAAPQTLPV  120
KGEPGAADAP LASRTPPIPP FNAAPPSVDP AALHAAAALQ GVPGLSAAAA AAAAAAAAAS  180
PLALAAAVSP TAAAAMQLNS LSQAQPKPRS GARPARPPSG GGAGNGNGGM TSSGGQGGCD  240
GSGMEDMTGL DKNEVRRMRR MQSNRESARR SRKRKQEHLQ TLEQQLDDMA AKAAEANARA  300
QEAERRCADL EARLERARDE LERLRGGNDN GEANGNGNGA PEQRNGIRTF DEGAEGGAPP  360
GAAAPAAKRQ RKQQQPVSAL AGEGLDARED GKAAAAKQAE PVHSNGRRRS SSDDGGSGDG  420
SRGSE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1268274RRSRKRK
2268275RRSRKRKQ
3270275SRKRKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013906665.10.0hypothetical protein MNEG_0316
TrEMBLA0A0D2NU980.0A0A0D2NU98_9CHLO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP522889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.11e-09basic leucine zipper 9
Publications ? help Back to Top
  1. Bogen C, et al.
    Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production.
    BMC Genomics, 2013. 14: p. 926
    [PMID:24373495]