PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

XP_013902444.1

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium

Family

Protein Properties

Length: 337aa MW: 36708.8 Da PI: 4.5164

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013902444.1	genome	BU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32.7	1.7e-10	256	303	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqky 47 + rWT+e e l+++v+++G W+tI + + g+ qck++++++ XP_013902444.1 256 KTRWTQEQIEALIEGVERHGLSAWRTIVQDVRlAGKNNMQCKDKFRNL 303 579*******************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.921	251	308	IPR017930	Myb domain
SMART	SM00717	2.5E-8	255	306	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.4E-11	255	304	IPR009057	Homeodomain-like
SuperFamily	SSF46689	9.72E-12	255	306	IPR009057	Homeodomain-like
Pfam	PF00249	1.3E-7	256	303	IPR001005	SANT/Myb domain
CDD	cd11660	2.06E-12	258	304	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MAGLPLADPE QQVLDPSVLA AASVVDMHDT NGAAIAIDPG VLSAIVATGT LGCDSFIGPD 60 GQHIQVVGEE ELQQHLAQLA ATGVYAVDGS DLVAPLQQQL AAHERAQMEG IRRGDTQALQ 120 SAKRAGTLIT VNFTLELPPE LEDLDLGDRS GIIEAPQSSD VAQLKRLFMY NAHNKLLPGL 180 QMLITEDGCE MLDMDEEGNP VPISACGVTN GSKITLRIVF PDDLDTLPLV DEAIVSSAYS 240 AGTLVQHMQG RQPGRKTRWT QEQIEALIEG VERHGLSAWR TIVQDVRLAG KNNMQCKDKF 300 RNLCLTIIQG RPERGLTLDW RLKDRVRQLI EQENIKF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013902444.1	0.0	hypothetical protein MNEG_4532
TrEMBL	A0A0D2MKE0	0.0	A0A0D2MKE0_9CHLO; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G17520.1	7e-09	MYB_related family protein

Link Out ? help Back to Top
Entrez Gene	25737409

Publications ? help Back to Top
Bogen C, et al. Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production. BMC Genomics, 2013. 14: p. 926 [PMID:24373495]