PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013901867.1

Organism

Monoraphidium neglectum

Taxonomic ID

145388

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium

Family

C3H

Protein Properties

Length: 564aa MW: 57721.9 Da PI: 7.9644

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013901867.1	genome	BU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.4	1e-07	71	91	6	26
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C++ +r+G C++Gd+C++aH+ XP_013901867.1 71 CPDIRRSGRCPRGDSCPYAHS 91 666679**************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	1.8E-4	66	92	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	7.2E-6	69	96	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.5E-7	70	95	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.5E-5	70	91	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.385	70	93	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.5E-4	98	131	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	17	101	124	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 564 aa Download sequence Send to blast
MADAGDLTAA SSGALAEKIK EWTPEMMMHS FKVELCTDEA AHDWLECPYA HRGEKAARRD 60 PATHNHVGVI CPDIRRSGRC PRGDSCPYAH SVFELHLHPN RYRTQLCTMG ASCRRPVCFF 120 AHTVEEMRSP PEGASAAPGA PPGGAGAPVP PPRGLSFDLS ADGGAAAAAA MRAAAAAPVG 180 GRASLESSAA AAAAAAAAMK TTSFGALGSL GRPAPATPAA LAAPGRPPAG RMSFDALVRP 240 RAVPVAGRQV PPQQRSSLDE SALRRLSLPS LLPAELGFTA DDSSCGSASD SPVAESAPSP 300 GLGSVHGSGA ALAPQTPPNA APWLAAGAHH PQQVRAAIAL LERGSSSDAS SSASSTASPS 360 SSAGGRRRAG LDGGSRPPPS GGWGATTAAQ PGAPAQQMLS ALLVQQQCEQ MAAQQCEQIA 420 AQQRDRLAAH QHLQAAQAAQ QQQQALQHQQ AQQHLAAHQQ AQQMHLRQQQ IAEQQKTVAL 480 SALWLQERRA AAAAAAAVHA AQQETNALAA LRWGLAMQQQ LPPEVLAGMA AAGAAAGGEM 540 GPAGAPPDLM ALASHLHLMR AQMT

Sequence ? help Back to Top

Protein Sequence Length: 564 aa Download sequence Send to blast

MADAGDLTAA SSGALAEKIK EWTPEMMMHS FKVELCTDEA AHDWLECPYA HRGEKAARRD  60
PATHNHVGVI CPDIRRSGRC PRGDSCPYAH SVFELHLHPN RYRTQLCTMG ASCRRPVCFF  120
AHTVEEMRSP PEGASAAPGA PPGGAGAPVP PPRGLSFDLS ADGGAAAAAA MRAAAAAPVG  180
GRASLESSAA AAAAAAAAMK TTSFGALGSL GRPAPATPAA LAAPGRPPAG RMSFDALVRP  240
RAVPVAGRQV PPQQRSSLDE SALRRLSLPS LLPAELGFTA DDSSCGSASD SPVAESAPSP  300
GLGSVHGSGA ALAPQTPPNA APWLAAGAHH PQQVRAAIAL LERGSSSDAS SSASSTASPS  360
SSAGGRRRAG LDGGSRPPPS GGWGATTAAQ PGAPAQQMLS ALLVQQQCEQ MAAQQCEQIA  420
AQQRDRLAAH QHLQAAQAAQ QQQQALQHQQ AQQHLAAHQQ AQQMHLRQQQ IAEQQKTVAL  480
SALWLQERRA AAAAAAAVHA AQQETNALAA LRWGLAMQQQ LPPEVLAGMA AAGAAAGGEM  540
GPAGAPPDLM ALASHLHLMR AQMT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013901867.1	0.0	Zinc finger CCCH domain-containing protein 2
TrEMBL	A0A0D2JVQ2	0.0	A0A0D2JVQ2_9CHLO; Zinc finger CCCH domain-containing protein 2

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP60	15	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G25900.2	6e-36	C3H family protein

Link Out ? help Back to Top
Entrez Gene	25737990

Publications ? help Back to Top
Bogen C, et al. Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production. BMC Genomics, 2013. 14: p. 926 [PMID:24373495]