PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013901055.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 159aa MW: 17214.6 Da PI: 9.0446 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 45.8 | 7.9e-15 | 14 | 58 | 7 | 51 |
HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 7 snrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rq t+ kR+ ++ KA EL v+C+ +va+++f +g+l +s+ XP_013901055.1 14 GLRQETYEKRKRSLMRKAMELAVMCNSQVALVMFDDKGRLTQFST 58 5799***************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 19.554 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.9E-11 | 1 | 59 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.7E-14 | 2 | 22 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.23E-20 | 2 | 75 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.5E-14 | 16 | 56 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.7E-14 | 22 | 37 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.7E-14 | 37 | 58 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009838 | Biological Process | abscission | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0010048 | Biological Process | vernalization response | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0080187 | Biological Process | floral organ senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence Send to blast |
MRHRTELRYI QQGGLRQETY EKRKRSLMRK AMELAVMCNS QVALVMFDDK GRLTQFSTAE 60 MDAVLEQYGK AVLEPHERYT PHDMLYGNVW ANGFGLGPMA GGAGGTTQGT APAQSPGDSP 120 ASSSEAFQAA AGAQQLLGPL GLAVDAATFP PLSPRRLRT |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013901055.1 | 1e-115 | MADS-box transcription factor 55 | ||||
TrEMBL | A0A0D2N8G6 | 1e-113 | A0A0D2N8G6_9CHLO; MADS-box transcription factor 55 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP3656 | 13 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G22950.1 | 2e-15 | AGAMOUS-like 19 |
Link Out ? help Back to Top | |
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Entrez Gene | 25738799 |
Publications ? help Back to Top | |||
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