PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013900313.1

Organism

Monoraphidium neglectum

Taxonomic ID

145388

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium

Family

MYB_related

Protein Properties

Length: 430aa MW: 46334.9 Da PI: 10.1499

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013900313.1	genome	BU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.4	7.7e-09	13	36	20	45
TTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 20 GggtWktIartmgkgRtlkqcksrwq 45 ++ W++Ia+ ++ gRt++ +k++w+ XP_013900313.1 13 TNK-WAAIAKLLP-GRTDNAIKNHWN 36 566.*******.*********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.565	1	43	IPR017930	Myb domain
SuperFamily	SSF46689	4.65E-8	3	46	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.5E-11	10	43	IPR009057	Homeodomain-like
Pfam	PF00249	5.1E-7	11	36	IPR001005	SANT/Myb domain
CDD	cd00167	6.94E-6	13	39	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence Send to blast
MDVWLSQGQD VFTNKWAAIA KLLPGRTDNA IKNHWNATLK RKLSSGEPLN NAYLDAGCTL 60 DWLLSHKDAP APEPRNPGPA EPVAAPAAGA ARPGKRKKRR LARGIKKRKA KGGKASQAAV 120 AAAQAALAAA AASGASGDRT PAQQLPTEQQ REQQQSKQQS EEQLRPASPT RELDEQCHQP 180 TLAFHSHISA GSAAHDVATR DAAAPPRTVA GPASSSDASA AGFSWRPAAA AVVTAPVDGR 240 SRPPGSPWKQ QQQQQQQQQQ QQQHERHPMH SAHAEQHRAR QQELLYHRQA LELRVMQERQ 300 RAEALALGLR VQEEQQRLQA QWQCRLLQQQ QGLREQWAHF APNNHYFSSL LGGGTAYGQA 360 GAFAVQCQEL AACPAPHEPW AAFCGDLLAA PACGSAPLLA QLPPAAGTRV GRLMSPAAFD 420 MMLTSAGTDR

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence Send to blast

MDVWLSQGQD VFTNKWAAIA KLLPGRTDNA IKNHWNATLK RKLSSGEPLN NAYLDAGCTL  60
DWLLSHKDAP APEPRNPGPA EPVAAPAAGA ARPGKRKKRR LARGIKKRKA KGGKASQAAV  120
AAAQAALAAA AASGASGDRT PAQQLPTEQQ REQQQSKQQS EEQLRPASPT RELDEQCHQP  180
TLAFHSHISA GSAAHDVATR DAAAPPRTVA GPASSSDASA AGFSWRPAAA AVVTAPVDGR  240
SRPPGSPWKQ QQQQQQQQQQ QQQHERHPMH SAHAEQHRAR QQELLYHRQA LELRVMQERQ  300
RAEALALGLR VQEEQQRLQA QWQCRLLQQQ QGLREQWAHF APNNHYFSSL LGGGTAYGQA  360
GAFAVQCQEL AACPAPHEPW AAFCGDLLAA PACGSAPLLA QLPPAAGTRV GRLMSPAAFD  420
MMLTSAGTDR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	94	108	KRKKRRLARGIKKRK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013900313.1	0.0	hypothetical protein MNEG_6665
TrEMBL	A0A0D2L1W8	0.0	A0A0D2L1W8_9CHLO; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50060.1	4e-12	myb domain protein 77

Link Out ? help Back to Top
Entrez Gene	25739541

Publications ? help Back to Top
Bogen C, et al. Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production. BMC Genomics, 2013. 14: p. 926 [PMID:24373495]