PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013896253.1
Organism
Monoraphidium neglectum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
Family M-type_MADS
Protein Properties Length: 388aa    MW: 40474.4 Da    PI: 5.1606
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013896253.1genomeBUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF34.42.9e-111058351
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    i ++ +r+v ++k +  ++ KA EL vLC++  a+++f   gkl  +s+
  XP_013896253.1 10 IVDDKQREVVYAKGKLKLMRKAMELAVLCNTTCAIVMFDGAGKLTQFST 58
                    668899*****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-6159IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.806160IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.29E-17274IPR002100Transcription factor, MADS-box
PRINTSPR004048.4E-10222IPR002100Transcription factor, MADS-box
PfamPF003199.3E-111056IPR002100Transcription factor, MADS-box
PRINTSPR004048.4E-102237IPR002100Transcription factor, MADS-box
PRINTSPR004048.4E-103758IPR002100Transcription factor, MADS-box
PRINTSPR015743.8E-5175199IPR005398Tubby, N-terminal
PRINTSPR015743.8E-5254279IPR005398Tubby, N-terminal
PRINTSPR015743.8E-5362388IPR005398Tubby, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MKRSIDLRYI VDDKQREVVY AKGKLKLMRK AMELAVLCNT TCAIVMFDGA GKLTQFSTSD  60
MDAILEQYGQ AVLEPHERYT PHDLLYGSML YANGFGVGPV AAPATVARSA QGPAGAGPSS  120
SPGESPSGVS EAIGTQHLLG PLGLSIDAAT FPPVSPRSEQ AYSAIAGEFE KMLATMQQQQ  180
MEQQQHLQQL HRQQQRQQRR QQHKEEQAEE QLEQREQLPE GEGDIVGQHE AVAGPPPRPA  240
SAATPSSGSM PPPAARKPLA PAPTGAELAA VALSGVAGAV PLAEAGVHAA AAPVPDDLLL  300
GVSAMATDIA VEQSGGEERA PVKAGLQDEG TAAASEGVPA ASEAKEAAPA HAVAEVAAVV  360
EGSVERASRR GQKRSRKRTS EAGNTGDV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-15285385MEF2 CHIMERA
6byy_B1e-15285385MEF2 CHIMERA
6byy_C1e-15285385MEF2 CHIMERA
6byy_D1e-15285385MEF2 CHIMERA
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013896253.10.0Myocyte-specific enhancer factor 2B
TrEMBLA0A0D2KNM50.0A0A0D2KNM5_9CHLO; Myocyte-specific enhancer factor 2B
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP36561314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.14e-11AGAMOUS-like 21
Publications ? help Back to Top
  1. Bogen C, et al.
    Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production.
    BMC Genomics, 2013. 14: p. 926
    [PMID:24373495]