PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.O00642.1.p
Common NameMIMGU_mgv1a020739mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family bHLH
Protein Properties Length: 515aa    MW: 57187.5 Da    PI: 7.4724
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.O00642.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.88.3e-13361407455
                       HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                       +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  Migut.O00642.1.p 361 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYITELQ 407
                       799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.2E-519197IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.704357406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-18360422IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.93E-14360411No hitNo description
PfamPF000102.5E-10361407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-18361419IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-16363412IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MFMANNENLQ NKLSDLVERP NSSNFSWNYA IFWQLSKSKS GDLVLGWGDG CCREPLEEED  60
SEVARILNMR LEDESQQRMR KRVLQKLHMS SGGTDEDSYA FGLDKVTDAE MFFLASMYFS  120
FSRGEGGPGR CLGSGKHVWF SDTLKSSTDY CFRSFLAKLA GVRTVALIPT DIGVVELGSV  180
KCIPESLELG NLIRSSFSSL SGLVRAKKAA AVAVTTDKKD TQVVPKIFGQ DMYSNHTQFR  240
QKSVVGKVED SNRLPFTNTQ NGFLGWTQYG NVKPVNPPSN NLHELVNMAK KEYQFSNFQT  300
QKKPAQMQID FGGATSRTVI SRPRSAESEH SDVDEGVGIS GDNRSRKRGR KPANGREEAL  360
NHVEAERQRR EKLNQRFYAL RAVVPNISKM DKASLLGDAI AYITELQKKL KDMESEDERV  420
ITAPNTKIQD CAPRIDIETG CDEVTVKVIC PLDSHPVSRV VEAIKNVNAT IVDANFAAGS  480
EEVFHTFVVK SSQGSEQLTK DKLIEAFSGE SKSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A7e-28355416263Transcription factor MYC2
5gnj_B7e-28355416263Transcription factor MYC2
5gnj_E7e-28355416263Transcription factor MYC2
5gnj_F7e-28355416263Transcription factor MYC2
5gnj_G7e-28355416263Transcription factor MYC2
5gnj_I7e-28355416263Transcription factor MYC2
5gnj_M7e-28355416263Transcription factor MYC2
5gnj_N7e-28355416263Transcription factor MYC2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.O00642.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012833412.10.0PREDICTED: transcription factor bHLH13-like, partial
SwissprotA0A3Q7ELQ20.0MTB1_SOLLC; Transcription factor MTB1
TrEMBLA0A022RP590.0A0A022RP59_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35852348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.31e-172bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]