PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.O00350.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family bHLH
Protein Properties Length: 351aa    MW: 39394.2 Da    PI: 6.7138
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.O00350.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.94.3e-09210257455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR+ri +++  L+ l+P +    +k   Ka +L + ++Y++sLq
  Migut.O00350.1.p 210 SHSLAERVRRERISERMKLLQALVPGC----DKVTGKALMLDEIINYVQSLQ 257
                       8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.24E-16204273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.88E-10204261No hitNo description
Gene3DG3DSA:4.10.280.101.4E-15206271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.383206256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-6210257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.0E-10212262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MAAFSSSSSL FEQNQPFIID SIFLPNSPST ININNINNNK MLCSSSPFEE PNSTYLSCFP  60
QFFQPDDDAN PQTLINNLHQ NSNNIITTIN NNNNDANSSV MSVTNKNSMD SSSYSIVTHK  120
CDLSIDQVLT TTATTTTTTT TTPIEEKTTK KRKSKEGSSP NSAQSKDKRE VSKEKKQKKM  180
KECKEKKILV EEPPTGYIHV RARRGQATDS HSLAERVRRE RISERMKLLQ ALVPGCDKVT  240
GKALMLDEII NYVQSLQNQV EFLSMKLASV NPMFYDFGVD LESFMVRPDQ DLSNLPNMQE  300
CHPTVTANDH YHMLLENSPN SFIFQASVDE HRQKNINQSG LISSSLFPFN *
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.O00350.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2575521e-101KP257552.1 Salvia miltiorrhiza clone 120 basic helix-loop-helix transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012842728.10.0PREDICTED: transcription factor bHLH137
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41162345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.21e-52bHLH family protein