PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.O00281.1.p
Common NameMIMGU_mgv1a002455mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family FAR1
Protein Properties Length: 673aa    MW: 77900.3 Da    PI: 6.3774
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.O00281.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1721.4e-2259143190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                       +fYn YAk  GF +r+s+s  +++ +e +++++ Cs  g++++++ +     ++r+etrtgC a++ vk+ + ++w++ ++el+HnH+++
  Migut.O00281.1.p  59 DFYNVYAKGQGFGIRVSNSWFRSKRRERYRAKLSCSSAGFKKKSEAN-----NPRPETRTGCPAMVIVKLVDAHRWRIVEVELDHNHPVS 143
                       6*********************99999***************99888.....9**********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.0E-2059144IPR004330FAR1 DNA binding domain
PfamPF105511.6E-25265356IPR018289MULE transposase domain
PROSITE profilePS509669.606553589IPR007527Zinc finger, SWIM-type
SMARTSM005753.0E-5564591IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 673 aa     Download sequence    Send to blast
MEAVSLNTEP IFGEGDEYGD EGNYSMLEYS NEALGVQLKR ESWPPIEGLE FESFDEAYDF  60
YNVYAKGQGF GIRVSNSWFR SKRRERYRAK LSCSSAGFKK KSEANNPRPE TRTGCPAMVI  120
VKLVDAHRWR IVEVELDHNH PVSPETKRFY KSHKKMCLAA KEVQKTAPVK EIHTIKLYRT  180
DVVDSLCNGH SKTDERDNGN SMDHSKHLDL KEGDAHAVYN YFCRMKLTNP NFFYLMDLDD  240
EGRLNNVFWA DARSRIAHNY FSDTITIDTT SLTNKYEIPL VSFVGINHHG QSVLLGCGFL  300
GHESVEYFVW MCRAWLTCML GRHPQVIVTD QSKLLHMAIL EVFPQARHCY CLSYIMHRVP  360
EKLGGLSGFE AIKRQLSKAV YDSLKISEFE TLWGEMINQH SLGNNKWLQL LYEDRQMWAP  420
VYLKDTFFVG MLTISESSEG GSSAFFDGYI HKHTSFKEFL DKYDLALQRK HLKEAIEDFE  480
SRNSRFELKT KSNYEFQLSK VYTKEMFKKC QIEVEGMYSC FNTKQVAAED EIMTFVVKEG  540
IEVEGKEKET RQYEVVYETS QTEVRCICSL FSAKGYLCRH ALNVLNYNGV EEIPSQYILP  600
RWNKEYKRKF ALDVGFSDLD ADSCPGEWYN HLSRRAVEVV EEGAQSQEHY EAVMQELDTL  660
LTKFSVLDRK LT*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269|PubMed:15591448}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.O00281.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012855693.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 6-like
SwissprotQ9SSQ40.0FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBLA0A022Q2T20.0A0A022Q2T2_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13471970
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.10.0FAR1-related sequence 6
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]