PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.N03122.1.p

Common Name

LOC105959550, MIMGU_mgv1a020470mg

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

SRS

Protein Properties

Length: 347aa MW: 37701.2 Da PI: 7.3798

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.N03122.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	215.8	9.8e-67	123	279	4	154
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaes 96 ++sCqdCGnqakkdC+h+RCRtCCksrg+ C+thvkstWvpaa+rrer qq++++++++++s+ + +++++++l ++ + + ++l +++ Migut.N03122.1.p 123 DGISCQDCGNQAKKDCEHMRCRTCCKSRGYPCQTHVKSTWVPAARRRERLQQQQQLTTTTTNSSLQTDQQQQQQL-AAVRGGENPKRLREGDG 214 6789*******************************************88888887777666644444444443.34444444555555555 PP DUF702 97 kkeletss.......lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 + s +P+e+ss+avfrcvrvs++dd+ee+laYqtav+igGhvfkGiLydqG+e+ Migut.N03122.1.p 215 RAGAGGSGggfelghFPAELSSPAVFRCVRVSAMDDAEEHLAYQTAVNIGGHVFKGILYDQGPES 279 544444444555555**********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.9E-62	124	278	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	2.9E-27	126	168	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	8.5E-27	229	277	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048467	Biological Process	gynoecium development

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MSGFFSLSGK NHDNNQEQQD QHNQTAETGN NNSNNYNLFL LNKNEEIYSK GFEVWQQYYQ 60 LHHQRSHHQD VDFSIGPSSG GRRRSIGGGD EPGNYGSYNN NRSAAELGFR VMNHQGRGAV 120 GSDGISCQDC GNQAKKDCEH MRCRTCCKSR GYPCQTHVKS TWVPAARRRE RLQQQQQLTT 180 TTTNSSLQTD QQQQQQLAAV RGGENPKRLR EGDGRAGAGG SGGGFELGHF PAELSSPAVF 240 RCVRVSAMDD AEEHLAYQTA VNIGGHVFKG ILYDQGPESR YPGGAAGEGP SSAGLIGGGS 300 HQQSLDLITA TTSNTNLTML DPSIYPSSHQ LSGFMAGTQF FLPPRP*

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MSGFFSLSGK NHDNNQEQQD QHNQTAETGN NNSNNYNLFL LNKNEEIYSK GFEVWQQYYQ  60
LHHQRSHHQD VDFSIGPSSG GRRRSIGGGD EPGNYGSYNN NRSAAELGFR VMNHQGRGAV  120
GSDGISCQDC GNQAKKDCEH MRCRTCCKSR GYPCQTHVKS TWVPAARRRE RLQQQQQLTT  180
TTTNSSLQTD QQQQQQLAAV RGGENPKRLR EGDGRAGAGG SGGGFELGHF PAELSSPAVF  240
RCVRVSAMDD AEEHLAYQTA VNIGGHVFKG ILYDQGPESR YPGGAAGEGP SSAGLIGGGS  300
HQQSLDLITA TTSNTNLTML DPSIYPSSHQ LSGFMAGTQF FLPPRP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.N03122.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012839127.1	0.0	PREDICTED: protein SHI RELATED SEQUENCE 5-like
TrEMBL	A0A022RAI1	0.0	A0A022RAI1_ERYGU; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA678	24	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	2e-56	SHI-related sequence 5

Link Out ? help Back to Top
Phytozome	Migut.N03122.1.p
Entrez Gene	105959550