PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.N02689.1.p | ||||||||
Common Name | LOC105958897, MIMGU_mgv1a013600mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | MYB | ||||||||
Protein Properties | Length: 216aa MW: 24206.8 Da PI: 8.2879 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56 | 9.2e-18 | 47 | 92 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd++l ++v ++G ++W++I +++ gR++k+c++rw + Migut.N02689.1.p 47 KGPWSAEEDKILTRLVDRYGARNWSLIGKYVK-GRSGKSCRLRWCNQ 92 79*****************************9.***********985 PP | |||||||
2 | Myb_DNA-binding | 47.9 | 3.1e-15 | 101 | 143 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++ Ed+ ++ a+ ++G++ W+tIar + gRt++ +k++w++ Migut.N02689.1.p 101 PFSKAEDDAIAAAHDRYGNR-WATIARLLH-GRTDNAVKNHWNST 143 79******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.182 | 42 | 97 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.71E-30 | 45 | 140 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.5E-15 | 46 | 95 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.0E-17 | 47 | 92 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-23 | 48 | 99 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.25E-13 | 49 | 91 | No hit | No description |
SMART | SM00717 | 1.4E-12 | 98 | 146 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 18.005 | 99 | 148 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.2E-21 | 100 | 147 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.03E-9 | 101 | 144 | No hit | No description |
Pfam | PF00249 | 1.7E-12 | 101 | 143 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MDSFNRCSYA SASSSSSETS SDSSSLSGIK STTTPANNAE VLCERIKGPW SAEEDKILTR 60 LVDRYGARNW SLIGKYVKGR SGKSCRLRWC NQLSPEIEHR PFSKAEDDAI AAAHDRYGNR 120 WATIARLLHG RTDNAVKNHW NSTLKRRCIH LQRQQKRRLD DDDLRDCTES NTASEFSPSP 180 ASCDFYEHDA MTALSLAPPG TERRQENFPV GFWSA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 9e-40 | 44 | 148 | 1 | 105 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor (PubMed:23067202, PubMed:23603962). Represses the expression of protein phosphatases 2C in response to abscisic acid (ABA). Confers resistance to abiotic stresses dependent of ABA (PubMed:18162593, PubMed:9678577). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB44 is enhanced by direct interaction between MYB44 and PYL8 (PubMed:24894996). Transcriptional activator of WRKY70 by direct binding to its promoter region, especially at 5'-TAACNG-3' and 5'-CNGTTA-3' symmetric motifs (PubMed:23067202, PubMed:23603962). Activates salicylic acid (SA)- mediated defenses and subsequent resistance to biotrophic pathogen P.syringae pv. tomato DC3000, but represses jasmonic acid (JA)-mediated defenses responses against the necrotrophic pathogen A.brassicicola (PubMed:23067202). {ECO:0000269|PubMed:18162593, ECO:0000269|PubMed:23067202, ECO:0000269|PubMed:23603962, ECO:0000269|PubMed:24894996, ECO:0000269|PubMed:9678577}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.N02689.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By drought, cold, high salinity, cadmium (CdCl(2)), salicylic acid (SA), jasmonate (JA), ethylene, gibberellic acid (GA), and ABA (PubMed:16463103, PubMed:18162593, PubMed:23067202). The induction by JA is COI1-dependent (PubMed:23067202). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18162593, ECO:0000269|PubMed:23067202}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012838355.1 | 1e-160 | PREDICTED: myb-related protein A-like | ||||
Swissprot | Q9FDW1 | 2e-55 | MYB44_ARATH; Transcription factor MYB44 | ||||
TrEMBL | A0A022R720 | 1e-158 | A0A022R720_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7950 | 21 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67300.1 | 6e-57 | myb domain protein r1 |
Link Out ? help Back to Top | |
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Phytozome | Migut.N02689.1.p |
Entrez Gene | 105958897 |