PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.N02625.1.p | ||||||||
Common Name | LOC105958885, MIMGU_mgv1a013837mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | LBD | ||||||||
Protein Properties | Length: 210aa MW: 22825.8 Da PI: 5.1554 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 134.5 | 4e-42 | 37 | 137 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk+lrr+C+++Cvlapyfp ++p kf +h++FGasn++k+l++lpe +r da+ss+vyeA+ar+rdPvyG++g i +lq+q++ l+++ Migut.N02625.1.p 37 PCAACKILRRRCVDKCVLAPYFPPNDPLKFTTAHRVFGASNIIKFLQELPEVQRADAVSSMVYEANARLRDPVYGCAGAICQLQKQVNDLQEQ 129 7******************************************************************************************** PP DUF260 94 lallkeel 101 la+ +++l Migut.N02625.1.p 130 LAKSQAQL 137 ***99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.077 | 36 | 137 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.7E-42 | 37 | 134 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MEGSTTDTTS VTNYGSVSSA SSSPPRPQSS AVLVASPCAA CKILRRRCVD KCVLAPYFPP 60 NDPLKFTTAH RVFGASNIIK FLQELPEVQR ADAVSSMVYE ANARLRDPVY GCAGAICQLQ 120 KQVNDLQEQL AKSQAQLTNF QCQNANLMAL ICMEMTQSPL AISSPLIFDH QQQNSYDNFA 180 SCLGNNTSFL DDQNILGILS SDSQQFVWT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-43 | 35 | 142 | 9 | 116 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-43 | 35 | 142 | 9 | 116 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.N02625.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012838343.1 | 1e-154 | PREDICTED: LOB domain-containing protein 1-like | ||||
Swissprot | Q9SK08 | 2e-64 | LBD11_ARATH; LOB domain-containing protein 11 | ||||
TrEMBL | A0A022RB96 | 1e-153 | A0A022RB96_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28500.1 | 2e-66 | LOB domain-containing protein 11 |
Link Out ? help Back to Top | |
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Phytozome | Migut.N02625.1.p |
Entrez Gene | 105958885 |