PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.N02605.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | B3 | ||||||||
Protein Properties | Length: 235aa MW: 27241.6 Da PI: 3.9332 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 40.1 | 6.8e-13 | 13 | 94 | 12 | 98 |
HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +s ++++p +f+ +++ + +k ++l+d+ + Wev++ +++ ++++ +GW +F ++n L+ +Df+++ +dgr+ f +++f Migut.N02605.1.p 13 SSEIFRIPASFVMKMK--RALPKRVILRDRYTNMWEVEVATDGGY-SCYFIEGWTQFYEDNSLELKDFMILDYDGRNLF--DFRIFG 94 567899******7775..568999***************655555.455666**********************98877..666665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 11.491 | 2 | 96 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.2E-15 | 5 | 96 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 2.9E-7 | 7 | 96 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.94E-16 | 9 | 96 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.79E-11 | 11 | 93 | No hit | No description |
Pfam | PF02362 | 6.3E-10 | 13 | 92 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MDSPQAFVNC ITSSEIFRIP ASFVMKMKRA LPKRVILRDR YTNMWEVEVA TDGGYSCYFI 60 EGWTQFYEDN SLELKDFMIL DYDGRNLFDF RIFGRNSLEK KGVGSLKLNE HNTINQDYDD 120 ASMDDDHGDD DDDIHGDDVD DDDDIHDDDI DVVDVDVDDD DDDDDVDDNG DGDGDDIPRE 180 RIFKKKDLPD CYGAEIFRPE NPFFVSRSRL SGRQNELVLF FLDYPFIHHY FISN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.N02605.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012838182.1 | 1e-103 | PREDICTED: B3 domain-containing protein At5g60142-like, partial |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1091 | 22 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66980.1 | 1e-13 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.N02605.1.p |