PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.N02603.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family B3
Protein Properties Length: 406aa    MW: 45997 Da    PI: 4.4833
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.N02603.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.43e-1413941297
                      HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                      +s+ +++p +fa e  g+   +  ++l+d   +sWe+++ +++  + +++++GW++F  +n L++gD +vF++  ++ f   +++f
  Migut.N02603.1.p 13 SSRKFRIPAPFALETRGV--LGDRVILRDVYENSWEMEVVIDGEYEYCYFSEGWRQFYIENSLEVGDLMVFEYRANKLF--DFQIF 94
                      56679**********888..6678***************99*******************************9876666..56655 PP
2B346.28e-153143921292
                       HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE.. CS
                B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefel 92 
                       +++ l++pk+ + ++g+k   s t+ l de+g++W+ k+i +k  gr + tkGW++ ++ ng++  D+++ +++++  ++e+
  Migut.N02603.1.p 314 RKNELYIPKDVIVDYGLK--ISGTMFLVDERGNKWKSKMIKWKD-GRLWCTKGWRNLCNVNGINLDDTCICEFVREeGCEEY 392
                       4588************99..6779***************88887.589************************9987566555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.774297IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-16499IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.0E-18699IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.3E-12797IPR003340B3 DNA binding domain
CDDcd100173.47E-151194No hitNo description
PfamPF023628.5E-121390IPR003340B3 DNA binding domain
SuperFamilySSF1019363.53E-18300386IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.6E-17300387IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.152303402IPR003340B3 DNA binding domain
CDDcd100175.55E-10303389No hitNo description
SMARTSM010193.8E-12306402IPR003340B3 DNA binding domain
PfamPF023628.9E-13314390IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MNSHHAFFNF ISSSRKFRIP APFALETRGV LGDRVILRDV YENSWEMEVV IDGEYEYCYF  60
SEGWRQFYIE NSLEVGDLMV FEYRANKLFD FQIFGSNACQ KKGVGALKAN THHAVKQEYY  120
DDGDDDGIHD DVGAPKLIEH KVVKEEYDDA SMDVDDGDDD DDVIRDVGDD VIHDDSDDDD  180
DYVPEEGEEE EEELVNTNLE KAAKLKNKSK PAYPPCAPNT CEGHMHMDED ASDEDDVEQL  240
RTTSKTINAK SKSKSKSSTN STRGNTSGNG NIPCERIFKK KDLPDCYGAD IFRSGLASVP  300
KNPYFVSRSR VARRKNELYI PKDVIVDYGL KISGTMFLVD ERGNKWKSKM IKWKDGRLWC  360
TKGWRNLCNV NGINLDDTCI CEFVREEGCE EYSLLVTVVG GGLDK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.N02603.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012838181.10.0PREDICTED: putative B3 domain-containing protein At5g66980
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10912264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57720.11e-10B3 family protein