PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.N02597.2.p
Common NameLOC105959132, MIMGU_mgv1a001340mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family HD-ZIP
Protein Properties Length: 838aa    MW: 91670.4 Da    PI: 6.5477
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.N02597.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.83.7e-182583357
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                      k  ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Migut.N02597.2.p 25 KYVRYTTEQVEALERVYSECPKPSSLRRQQLIRECpilsHIEPKQIKVWFQNRRCREKQ 83
                      5678*****************************************************97 PP
2START157.11.4e-491643702203
                       HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEE CS
             START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galq 92 
                       +aee+++e+++ka+ ++  Wv+++ +++g++++ +f+ s+++sg a+ra+g+v  +++   +e+l+d++ W ++++++e+      g  g+++
  Migut.N02597.2.p 164 IAEETLAEFLAKATGTAVDWVQLPGMKPGPDSVGIFAISQSCSGVAARACGLVSLEPT-KIAEILKDRPSWYRDCRSVEVFTMFPAGngGTVE 255
                       7899******************************************************.7777777777**************999999**** PP

                       EEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHH CS
             START  93 lmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwll 181
                       l +++++a+++l+p Rdf+++Ry+ +l+ g++v++++S++     p+    s++vRa  lpSg+li+p+++g+s +++v+h +l++++++++l
  Migut.N02597.2.p 256 LLYTQTYAPTTLAPaRDFWTLRYTTTLQNGSLVVCERSLSGSGAGPSvaaASQFVRADILPSGYLIRPCEGGGSIIHIVDHLNLQAWSVPEVL 348
                       ****************************************99888888999****************************************** PP

                       HHHHHHHHHHHHHHHHHHTXXX CS
             START 182 rslvksglaegaktwvatlqrq 203
                       r+l++s+ + ++k++ ++l++ 
  Migut.N02597.2.p 349 RPLYESSKVVAQKITISALRYI 370
                       ****************999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.3E-18883IPR009057Homeodomain-like
PROSITE profilePS5007115.0462084IPR001356Homeobox domain
SMARTSM003893.2E-142288IPR001356Homeobox domain
SuperFamilySSF466892.01E-162386IPR009057Homeodomain-like
CDDcd000863.56E-152585No hitNo description
PfamPF000461.4E-152683IPR001356Homeobox domain
CDDcd146865.84E-677116No hitNo description
PROSITE profilePS5084827.225154382IPR002913START domain
CDDcd088757.90E-66158374No hitNo description
Gene3DG3DSA:3.30.530.201.4E-19163349IPR023393START-like domain
SuperFamilySSF559612.75E-34163375No hitNo description
SMARTSM002342.3E-40163373IPR002913START domain
PfamPF018528.5E-47164371IPR002913START domain
PfamPF086701.4E-49693835IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 838 aa     Download sequence    Send to blast
MAMVGQMMQR ENSSGSINKH LDSGKYVRYT TEQVEALERV YSECPKPSSL RRQQLIRECP  60
ILSHIEPKQI KVWFQNRRCR EKQRKESTRL QSVNRKLTAM NKLLMEENDR LQKQVSQLVC  120
ENTYMRQQLQ SVSAPNADAS CESAVSAPHH SLRDANNPAG LVSIAEETLA EFLAKATGTA  180
VDWVQLPGMK PGPDSVGIFA ISQSCSGVAA RACGLVSLEP TKIAEILKDR PSWYRDCRSV  240
EVFTMFPAGN GGTVELLYTQ TYAPTTLAPA RDFWTLRYTT TLQNGSLVVC ERSLSGSGAG  300
PSVAAASQFV RADILPSGYL IRPCEGGGSI IHIVDHLNLQ AWSVPEVLRP LYESSKVVAQ  360
KITISALRYI RQIAQETSGE VVYSLGRQPA VLRTFSQRLI RGFNDAINGF NDDGWSILSS  420
EGAEDVTIAI NSAKNPTTSS NSLLGGVLCA KASMLLQNVP PAVLVRFLRE HRSEWADFNI  480
DAYAAASLKA STYGCTGIRA TRFTGSQIIM PLGHTIEHEE MLEVIRLEGQ PLNHEDAFAS  540
RDIHLLQMCS GVDENAVGAC SELIFAPIDE MFPDDSPLLP SGFRIIPLHS KPDVLNTHKT  600
LDLTSSLEVG PTSGSAAENA ESSSSSRNTR SVLTIAFQFP LESNLHENVA AMARQYVRSV  660
ISSVQRAAIA ISPSGLSSSV GPRLSAASPE ALTLANWICQ SYSCHVGSEL LRAESSSSDS  720
VLKTLWHHQD AILCCSLKAV PVFIFANQAG LDMLETTLVA LQDITLDKIF DDLGRKALFS  780
EFAKIMQQGF GYLPGGICMS TMGRHISYEQ AVVWKVFEAE QNTMHCLAFS FVNWLFV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of interfascicular fiber (cortical cells) and secondary xylem differentiation in the inflorescence stems. Required for lateral shoot meristems (LSMs) and flower meristems (FMs) initiation. May be involved in the determination of vascular patterning and organ polarity (PubMed:10559440, PubMed:11169198, PubMed:11402186, PubMed:15111711, PubMed:15598805, PubMed:7555701). Directly regulates the expression of AGO10, ZPR1, ZPR2, ZPR3 and ZPR4 (PubMed:22781836). Required to regulate adaxial-abaxial polarity and leaf axial patterning (PubMed:20807212). {ECO:0000269|PubMed:10559440, ECO:0000269|PubMed:11169198, ECO:0000269|PubMed:11402186, ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:20807212, ECO:0000269|PubMed:22781836, ECO:0000269|PubMed:7555701}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.N02597.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by ZPR and miR165. Induced by DOF5.1 (PubMed:20807212). {ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:20807212}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012838630.10.0PREDICTED: homeobox-leucine zipper protein REVOLUTA isoform X4
SwissprotQ9SE430.0REV_ARATH; Homeobox-leucine zipper protein REVOLUTA
TrEMBLA0A022R8400.0A0A022R840_ERYGU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Lian H,Li X,Liu Z,He Y
    HYL1 is required for establishment of stamen architecture with four microsporangia in Arabidopsis.
    J. Exp. Bot., 2013. 64(11): p. 3397-410
    [PMID:23918970]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  5. Roodbarkelari F,Du F,Truernit E,Laux T
    ZLL/AGO10 maintains shoot meristem stem cells during Arabidopsis embryogenesis by down-regulating ARF2-mediated auxin response.
    BMC Biol., 2015. 13: p. 74
    [PMID:26358077]
  6. Shi B, et al.
    Two-Step Regulation of a Meristematic Cell Population Acting in Shoot Branching in Arabidopsis.
    PLoS Genet., 2016. 12(7): p. e1006168
    [PMID:27398935]