PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.N02597.1.p | ||||||||
Common Name | LOC105959132, MIMGU_mgv1a001340mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 841aa MW: 91986.8 Da PI: 6.5468 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.8 | 3.7e-18 | 25 | 83 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+++ ++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ Migut.N02597.1.p 25 KYVRYTTEQVEALERVYSECPKPSSLRRQQLIRECpilsHIEPKQIKVWFQNRRCREKQ 83 5678*****************************************************97 PP | |||||||
2 | START | 157.1 | 1.4e-49 | 167 | 373 | 2 | 203 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galq 92 +aee+++e+++ka+ ++ Wv+++ +++g++++ +f+ s+++sg a+ra+g+v +++ +e+l+d++ W ++++++e+ g g+++ Migut.N02597.1.p 167 IAEETLAEFLAKATGTAVDWVQLPGMKPGPDSVGIFAISQSCSGVAARACGLVSLEPT-KIAEILKDRPSWYRDCRSVEVFTMFPAGngGTVE 258 7899******************************************************.7777777777**************999999**** PP EEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHH CS START 93 lmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwll 181 l +++++a+++l+p Rdf+++Ry+ +l+ g++v++++S++ p+ s++vRa lpSg+li+p+++g+s +++v+h +l++++++++l Migut.N02597.1.p 259 LLYTQTYAPTTLAPaRDFWTLRYTTTLQNGSLVVCERSLSGSGAGPSvaaASQFVRADILPSGYLIRPCEGGGSIIHIVDHLNLQAWSVPEVL 351 ****************************************99888888999****************************************** PP HHHHHHHHHHHHHHHHHHTXXX CS START 182 rslvksglaegaktwvatlqrq 203 r+l++s+ + ++k++ ++l++ Migut.N02597.1.p 352 RPLYESSKVVAQKITISALRYI 373 ****************999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.3E-18 | 8 | 83 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.046 | 20 | 84 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.2E-14 | 22 | 88 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.01E-16 | 23 | 86 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.58E-15 | 25 | 85 | No hit | No description |
Pfam | PF00046 | 1.4E-15 | 26 | 83 | IPR001356 | Homeobox domain |
CDD | cd14686 | 5.86E-6 | 77 | 116 | No hit | No description |
PROSITE profile | PS50848 | 27.225 | 157 | 385 | IPR002913 | START domain |
CDD | cd08875 | 8.21E-66 | 161 | 377 | No hit | No description |
SMART | SM00234 | 2.3E-40 | 166 | 376 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 1.4E-19 | 166 | 352 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 2.75E-34 | 166 | 378 | No hit | No description |
Pfam | PF01852 | 8.6E-47 | 167 | 374 | IPR002913 | START domain |
Pfam | PF08670 | 1.5E-49 | 696 | 838 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 841 aa Download sequence Send to blast |
MAMVGQMMQR ENSSGSINKH LDSGKYVRYT TEQVEALERV YSECPKPSSL RRQQLIRECP 60 ILSHIEPKQI KVWFQNRRCR EKQRKESTRL QSVNRKLTAM NKLLMEENDR LQKQVSQLVC 120 ENTYMRQQLQ SVCNVSAPNA DASCESAVSA PHHSLRDANN PAGLVSIAEE TLAEFLAKAT 180 GTAVDWVQLP GMKPGPDSVG IFAISQSCSG VAARACGLVS LEPTKIAEIL KDRPSWYRDC 240 RSVEVFTMFP AGNGGTVELL YTQTYAPTTL APARDFWTLR YTTTLQNGSL VVCERSLSGS 300 GAGPSVAAAS QFVRADILPS GYLIRPCEGG GSIIHIVDHL NLQAWSVPEV LRPLYESSKV 360 VAQKITISAL RYIRQIAQET SGEVVYSLGR QPAVLRTFSQ RLIRGFNDAI NGFNDDGWSI 420 LSSEGAEDVT IAINSAKNPT TSSNSLLGGV LCAKASMLLQ NVPPAVLVRF LREHRSEWAD 480 FNIDAYAAAS LKASTYGCTG IRATRFTGSQ IIMPLGHTIE HEEMLEVIRL EGQPLNHEDA 540 FASRDIHLLQ MCSGVDENAV GACSELIFAP IDEMFPDDSP LLPSGFRIIP LHSKPDVLNT 600 HKTLDLTSSL EVGPTSGSAA ENAESSSSSR NTRSVLTIAF QFPLESNLHE NVAAMARQYV 660 RSVISSVQRA AIAISPSGLS SSVGPRLSAA SPEALTLANW ICQSYSCHVG SELLRAESSS 720 SDSVLKTLWH HQDAILCCSL KAVPVFIFAN QAGLDMLETT LVALQDITLD KIFDDLGRKA 780 LFSEFAKIMQ QGFGYLPGGI CMSTMGRHIS YEQAVVWKVF EAEQNTMHCL AFSFVNWLFV 840 * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of interfascicular fiber (cortical cells) and secondary xylem differentiation in the inflorescence stems. Required for lateral shoot meristems (LSMs) and flower meristems (FMs) initiation. May be involved in the determination of vascular patterning and organ polarity (PubMed:10559440, PubMed:11169198, PubMed:11402186, PubMed:15111711, PubMed:15598805, PubMed:7555701). Directly regulates the expression of AGO10, ZPR1, ZPR2, ZPR3 and ZPR4 (PubMed:22781836). Required to regulate adaxial-abaxial polarity and leaf axial patterning (PubMed:20807212). {ECO:0000269|PubMed:10559440, ECO:0000269|PubMed:11169198, ECO:0000269|PubMed:11402186, ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:20807212, ECO:0000269|PubMed:22781836, ECO:0000269|PubMed:7555701}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.N02597.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. Repressed by ZPR and miR165. Induced by DOF5.1 (PubMed:20807212). {ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:20807212}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012838628.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein REVOLUTA isoform X2 | ||||
Swissprot | Q9SE43 | 0.0 | REV_ARATH; Homeobox-leucine zipper protein REVOLUTA | ||||
TrEMBL | A0A022R840 | 0.0 | A0A022R840_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA457 | 24 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60690.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.N02597.1.p |
Entrez Gene | 105959132 |