PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.N02416.1.p | ||||||||
Common Name | MIMGU_mgv1a001288mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | FAR1 | ||||||||
Protein Properties | Length: 867aa MW: 97426.3 Da PI: 7.8067 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 39.8 | 1.4e-12 | 54 | 127 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY +YA+++GFs+r + +sk t+++f C k g + +r gC a+l+++ + ++kw+vtk+ + H+H+++ Migut.N02416.1.p 54 FYADYARDMGFSIRERF-DRSKAPAMGTSQEFLCCKDGMMKG--------------DRAGCGAMLRIESRGEKKWVVTKFAKLHSHTVV 127 9************9886.556678889***********9876..............4789**************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.0E-9 | 54 | 127 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 7.3E-28 | 261 | 353 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 11.189 | 539 | 575 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 6.6E-11 | 539 | 573 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 5.0E-8 | 550 | 577 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009506 | Cellular Component | plasmodesma | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 867 aa Download sequence Send to blast |
MGQRGGVTDA GHENYNNGGS MDAFGSSLVQ DEGRSFPEPH IGMEFDSENA AKMFYADYAR 60 DMGFSIRERF DRSKAPAMGT SQEFLCCKDG MMKGDRAGCG AMLRIESRGE KKWVVTKFAK 120 LHSHTVVNHS KLHYLRPKRH FAATANNVAG NFQGMDVVPS GVMYVSVDGN SIPAEMNHAG 180 KTMPASGGLT HTGKNIGSLG NSSRRTLGRD AQNLLDYFKK MQAENAGFYY AIQLDEENRM 240 ANAFWAEARS RTAYSHFGDA VVLDTTYRSN QYKVPFAPFT GVNHHGQTIL FGCALLLDES 300 EATFVWLFKT FLAAMNDRAP VSLTTDKDRA IRAAVAQVFP EVCHCVNKWH VLREGQGRMA 360 NVCTVHPNFQ MELYNCINMT ETIEEFESFW VSILDKYDLR RNDWLQSIYD ARTQWVPVYF 420 RDSFFAAMFP SPGFESSFLD GYVNQQTTLP MFFRQYKRAV ENSFEREVEA DFDTICTSPL 480 LRTPSPMEKQ AANLYTKRIF LKFQEELVET FVYTANRVDG DGHNSTYRVA KFEDNRKAYF 540 VSLNIAEMKA NCSCKMFEYS GILCRHVLTV FTVTNVLTLP SHYILNRWTR NARNAVNLAD 600 ECSELQGNES LTTRYNNLCK EAIRFAEEGA ITSETYSAAL ISLREGGKKV ASVKKGVAKI 660 APYSSQVSGV GYDDRRTSIA NQETTPLLWP RQDEIMRRFN LNDAGVSSQP ILDSSGPLMA 720 PVSLNRDSGQ TDMLVVPCLK TMTWVMENKN STPANRVAVI NLKLQDYGRT PAGESEVKFS 780 LSRVSLEPLL RSMAYISEQL STPANKVAFL NLKLQDTETM SGESEVKFQV SRDTLGAMLR 840 SMAYIREQLS NPMDPKQDNP AKRPRK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.N02416.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012838476.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 3 isoform X2 | ||||
Swissprot | Q9ZVC9 | 0.0 | FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3 | ||||
TrEMBL | A0A022R8E1 | 0.0 | A0A022R8E1_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA435 | 22 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27110.2 | 0.0 | FAR1-related sequence 3 |
Link Out ? help Back to Top | |
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Phytozome | Migut.N02416.1.p |
Publications ? help Back to Top | |||
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