PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.N02357.1.p

Common Name

LOC105958669, MIMGU_mgv1a022747mg

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

bHLH

Protein Properties

Length: 298aa MW: 33603.7 Da PI: 6.8591

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.N02357.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.2	6.8e-09	183	230	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN+++ L++++P + k + a +L + ++Y++sLq Migut.N02357.1.p 183 SHSLAERVRREKINERLKCLQDIVPGC----YKTMGMAVMLDEIINYVQSLQ 230 8***********************9....35599999*******9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.31E-16	177	247	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.57E-11	177	234	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.7E-16	179	241	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.707	179	229	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.3E-6	183	230	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.7E-9	185	235	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MADQYLLLQG LENLKNSFSL SDTSTAATDP NFDFILNQFY TNPIPIPIPN HHHHHQQQNP 60 GFAFDNLFFP PPPLPENDDE SPVKSEIFSG LFLHGDQDTI NTPLPQQTIS NYNNKRKAVE 120 TGTTTPRTAN SSPQVSSDNG GFITRKNSTT KRGKKMKGNE KKDEIKTMEV VHVRAKRGQA 180 TDSHSLAERV RREKINERLK CLQDIVPGCY KTMGMAVMLD EIINYVQSLQ NQVEFLSMKL 240 TTASSFYDFN SEADALETMQ RQKALETFKI QNGYSSADQF APLDLTFGCF PQFPHHR*

Functional Description ? help Back to Top
Source	Description
UniProt	Positive regulator of brassinosteroid signaling. {ECO:0000269\|PubMed:12454087}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.N02357.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269\|PubMed:12454087}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012838134.1	0.0	PREDICTED: transcription factor BEE 1-like
Swissprot	Q8GWK7	6e-60	BEE3_ARATH; Transcription factor BEE 3
TrEMBL	A0A022R651	0.0	A0A022R651_ERYGU; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3971	23	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18400.1	3e-59	BR enhanced expression 1

Link Out ? help Back to Top
Phytozome	Migut.N02357.1.p
Entrez Gene	105958669

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]