PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.N02067.1.p

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

NF-YB

Protein Properties

Length: 116aa MW: 13479.2 Da PI: 9.2675

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.N02067.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	76.3	4.4e-24	1	68	16	84
NF-YB 16 imkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplk 84 +mkk++P+ aki ++ k + vsefi fvt+easd+c+re+rkt+n d++wal+ l f++y +++ Migut.N02067.1.p 1 MMKKIMPQSAKIQEKQKRE-SKFVSEFICFVTGEASDRCNRENRKTVNKYDICWALSLLRFDNYSDAML 68 69********9998876.579****************************************9984 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00808	4.0E-10	1	55	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	3.77E-16	1	94	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	2.4E-20	1	89	IPR009072	Histone-fold
PRINTS	PR00615	6.9E-5	19	37	No hit	No description
PRINTS	PR00615	6.9E-5	38	56	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 116 aa Download sequence Send to blast
MMKKIMPQSA KIQEKQKRES KFVSEFICFV TGEASDRCNR ENRKTVNKYD ICWALSLLRF 60 DNYSDAMLRV NKSKNKTNNN CSSEEKDDER NFRDSTTPFD FGILETGRKS LANPY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	8e-16	1	67	21	88	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.N02067.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012850788.1	3e-34	PREDICTED: nuclear transcription factor Y subunit B-4-like
TrEMBL	A0A022RQ78	6e-42	A0A022RQ78_ERYGU; Uncharacterized protein (Fragment)
STRING	Migut.N02067.1.p	2e-80	(Erythranthe guttata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09030.1	1e-21	nuclear factor Y, subunit B4

Link Out ? help Back to Top
Phytozome	Migut.N02067.1.p