PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.N01873.4.p

Common Name

LOC105951759, MIMGU_mgv1a001358mg

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

FAR1

Protein Properties

Length: 757aa MW: 86371 Da PI: 6.584

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.N01873.4.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	50.6	6.2e-16	62	136	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Y++YA++vGF++ + + +s+ +g i++ +f Cs+e +++++ ++ C+a+l+++ +++++w+vtk++++HnH+l+ Migut.N01873.4.p 62 LYDTYARRVGFTTHVGQYIRSNPDGPIVSLEFFCSREVYKRKNIES--------------CNAMLRIESKDSENWVVTKFVEDHNHSLV 136 7************************************9998877..............************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.8E-13	62	136	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.8E-30	260	352	IPR018289	MULE transposase domain
Pfam	PF04434	3.9E-11	527	571	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	11.288	537	573	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.5E-7	548	575	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 757 aa Download sequence Send to blast
MDDKVVEVDM EKRQRNGKSQ TENNEDVAEN LSGNSTNQAE DENKNKPYIG MEFDSQESAK 60 DLYDTYARRV GFTTHVGQYI RSNPDGPIVS LEFFCSREVY KRKNIESCNA MLRIESKDSE 120 NWVVTKFVED HNHSLVGPSK VHFLRPRRHF AGAAAKKAPA LTEVADNNQN DIMVSVDGNH 180 VFVDPNENAP SMPLHFIQPC SRRRTLGRDA HNLLTYFKKM QSENPGFYYA IQLDEENRLS 240 NVFWADARSR TAYNHFGDAV VFDTMYRPNQ FQVPFAPFTG VNNHGQMVLF GCALLLDESE 300 SSFAWVFETW LSAMNNRRPV SITTDQDRAI KAAVNRVFPQ TRHCICKWHI LREGQERLAH 360 VYLSHPSFHG ELYSCINFSE TIEDFESAWS LILDRYDIGK NEWLHAVYNA RKQWAPVYFR 420 DTFFAALSSN HGVSSFFEGY VNQQTTIPMF FKQYERALEN SLEREIEADY YTNCTSPVLK 480 TPSPMEQQAA NLYTKKVFEK FQEELVETFV HTANKIDGDG SVSKFRVAKY EQDHKAYIVM 540 LDVSEMNASC SCQMFEYSGV LCRHILTVFT VTNVLTVPSH YILKRWTKNA RSASLVDEQY 600 TGVQCMESLS VRFNSLCREA LKFAEEGAVC TDTYSAAMEA LKDGEKKIAQ VKRSVGKNKQ 660 DNGSKKPSTP TPDKIPSLWP WQDSVPSRFN LNDSGAHIAD LSQPTMAPIA INRDGTLADN 720 TVVLTCFKSM TWILENKNPT TPRLWESYFR RNGGAV*

Sequence ? help Back to Top

Protein Sequence Length: 757 aa Download sequence Send to blast

MDDKVVEVDM EKRQRNGKSQ TENNEDVAEN LSGNSTNQAE DENKNKPYIG MEFDSQESAK  60
DLYDTYARRV GFTTHVGQYI RSNPDGPIVS LEFFCSREVY KRKNIESCNA MLRIESKDSE  120
NWVVTKFVED HNHSLVGPSK VHFLRPRRHF AGAAAKKAPA LTEVADNNQN DIMVSVDGNH  180
VFVDPNENAP SMPLHFIQPC SRRRTLGRDA HNLLTYFKKM QSENPGFYYA IQLDEENRLS  240
NVFWADARSR TAYNHFGDAV VFDTMYRPNQ FQVPFAPFTG VNNHGQMVLF GCALLLDESE  300
SSFAWVFETW LSAMNNRRPV SITTDQDRAI KAAVNRVFPQ TRHCICKWHI LREGQERLAH  360
VYLSHPSFHG ELYSCINFSE TIEDFESAWS LILDRYDIGK NEWLHAVYNA RKQWAPVYFR  420
DTFFAALSSN HGVSSFFEGY VNQQTTIPMF FKQYERALEN SLEREIEADY YTNCTSPVLK  480
TPSPMEQQAA NLYTKKVFEK FQEELVETFV HTANKIDGDG SVSKFRVAKY EQDHKAYIVM  540
LDVSEMNASC SCQMFEYSGV LCRHILTVFT VTNVLTVPSH YILKRWTKNA RSASLVDEQY  600
TGVQCMESLS VRFNSLCREA LKFAEEGAVC TDTYSAAMEA LKDGEKKIAQ VKRSVGKNKQ  660
DNGSKKPSTP TPDKIPSLWP WQDSVPSRFN LNDSGAHIAD LSQPTMAPIA INRDGTLADN  720
TVVLTCFKSM TWILENKNPT TPRLWESYFR RNGGAV*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.N01873.4.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012830662.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 3-like isoform X1
Swissprot	Q9ZVC9	0.0	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	A0A022RT31	0.0	A0A022RT31_ERYGU; Uncharacterized protein
STRING	Migut.N01873.1.p	0.0	(Erythranthe guttata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1-related sequence 3

Link Out ? help Back to Top
Phytozome	Migut.N01873.4.p
Entrez Gene	105951759

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]