PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.N01873.3.p | ||||||||
Common Name | MIMGU_mgv1a001358mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | FAR1 | ||||||||
Protein Properties | Length: 767aa MW: 87379.3 Da PI: 6.7347 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 50.6 | 6.3e-16 | 62 | 136 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Y++YA++vGF++ + + +s+ +g i++ +f Cs+e +++++ ++ C+a+l+++ +++++w+vtk++++HnH+l+ Migut.N01873.3.p 62 LYDTYARRVGFTTHVGQYIRSNPDGPIVSLEFFCSREVYKRKNIES--------------CNAMLRIESKDSENWVVTKFVEDHNHSLV 136 7**************************************9998877..............**************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 8.9E-13 | 62 | 136 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.9E-30 | 260 | 352 | IPR018289 | MULE transposase domain |
Pfam | PF04434 | 4.0E-11 | 527 | 571 | IPR007527 | Zinc finger, SWIM-type |
PROSITE profile | PS50966 | 11.288 | 537 | 573 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 2.5E-7 | 548 | 575 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 767 aa Download sequence Send to blast |
MDDKVVEVDM EKRQRNGKSQ TENNEDVAEN LSGNSTNQAE DENKNKPYIG MEFDSQESAK 60 DLYDTYARRV GFTTHVGQYI RSNPDGPIVS LEFFCSREVY KRKNIESCNA MLRIESKDSE 120 NWVVTKFVED HNHSLVGPSK VHFLRPRRHF AGAAAKKAPA LTEVADNNQN DIMVSVDGNH 180 VFVDPNENAP SMPLHFIQPC SRRRTLGRDA HNLLTYFKKM QSENPGFYYA IQLDEENRLS 240 NVFWADARSR TAYNHFGDAV VFDTMYRPNQ FQVPFAPFTG VNNHGQMVLF GCALLLDESE 300 SSFAWVFETW LSAMNNRRPV SITTDQDRAI KAAVNRVFPQ TRHCICKWHI LREGQERLAH 360 VYLSHPSFHG ELYSCINFSE TIEDFESAWS LILDRYDIGK NEWLHAVYNA RKQWAPVYFR 420 DTFFAALSSN HGVSSFFEGY VNQQTTIPMF FKQYERALEN SLEREIEADY YTNCTSPVLK 480 TPSPMEQQAA NLYTKKVFEK FQEELVETFV HTANKIDGDG SVSKFRVAKY EQDHKAYIVM 540 LDVSEMNASC SCQMFEYSGV LCRHILTVFT VTNVLTVPSH YILKRWTKNA RSASLVDEQY 600 TGVQCMESLS VRFNSLCREA LKFAEEGAVC TDTYSAAMEA LKDGEKKIAQ VKRSVGKNKQ 660 DNGSKKPSTP TPDKIPSLWP WQDSVPSRFN LNDSGAHIAD LSQPTMAPIA INRDGTLADN 720 TVVLTCFKSM TWILENKNPT SKVALINLKA APRLWESYFR RNGGAV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.N01873.3.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012830663.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 3-like isoform X2 | ||||
Swissprot | Q9ZVC9 | 0.0 | FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3 | ||||
TrEMBL | A0A022RQX1 | 0.0 | A0A022RQX1_ERYGU; Uncharacterized protein | ||||
STRING | Migut.N01873.1.p | 0.0 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27110.2 | 0.0 | FAR1-related sequence 3 |
Link Out ? help Back to Top | |
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Phytozome | Migut.N01873.3.p |
Publications ? help Back to Top | |||
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