PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.N01674.1.p | ||||||||
Common Name | LOC105952376, MIMGU_mgv1a014840mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | B3 | ||||||||
Protein Properties | Length: 177aa MW: 19387.3 Da PI: 6.2685 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 47.5 | 3.2e-15 | 58 | 147 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+ vl++s+ + + l +p + ++e ++ +l+ g+ W++ + ++++ r l +GWk Fv +n+Lk gD +vF+l+++++++lv Migut.N01674.1.p 58 FDLVLSKSHISHTFGLLFPASMIRELPRA---TIPAVLK-NGGKIWNMSY--CGGGVRPKLDSGWKTFVADNNLKIGDGCVFELMESTGTNLV 144 56678888888888888888888887432...3335555.59********..*********************************99999999 PP EEE CS B3 94 vkv 96 +kv Migut.N01674.1.p 145 FKV 147 987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.14E-17 | 54 | 145 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.0E-15 | 54 | 151 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.91E-18 | 56 | 151 | No hit | No description |
Pfam | PF02362 | 2.8E-13 | 58 | 147 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.069 | 58 | 153 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.4E-10 | 58 | 153 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MVTPSKRVAQ LAAVKMEACT TENAPENEEI RHTRFGSNSE PAKLDEDEIR YLSGKPYFDL 60 VLSKSHISHT FGLLFPASMI RELPRATIPA VLKNGGKIWN MSYCGGGVRP KLDSGWKTFV 120 ADNNLKIGDG CVFELMESTG TNLVFKVMIV RGDIPTELQE LIDSRGKSGD TPIVLD* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.N01674.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012831373.1 | 1e-129 | PREDICTED: B3 domain-containing protein Os04g0386900-like | ||||
TrEMBL | A0A022RTK1 | 1e-128 | A0A022RTK1_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1819 | 21 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 1e-08 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.N01674.1.p |
Entrez Gene | 105952376 |