PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.N01598.1.p
Common NameLOC105967303, MIMGU_mgv1a002533mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family C3H
Protein Properties Length: 663aa    MW: 71934.5 Da    PI: 6.9596
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.N01598.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.42.1e-07272292526
                       --SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                       +C++f++ G C++Gd C +aHg
  Migut.N01598.1.p 272 PCPDFRK-GACRRGDMCEYAHG 292
                       8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF127961.0E-1055129IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.208.8E-1759141IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.8E-1659138IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0536090IPR002110Ankyrin repeat
PROSITE profilePS5029715.16760136IPR020683Ankyrin repeat-containing domain
PRINTSPR014159.1E-66176IPR002110Ankyrin repeat
CDDcd002042.97E-1462138No hitNo description
SMARTSM002482.2E-495127IPR002110Ankyrin repeat
PROSITE profilePS5008812.31595130IPR002110Ankyrin repeat
PRINTSPR014159.1E-6114128IPR002110Ankyrin repeat
SMARTSM003564.0E-6267293IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.6E-4272294IPR000571Zinc finger, CCCH-type
PfamPF006425.8E-5272292IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582272294IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-4300330IPR000571Zinc finger, CCCH-type
SMARTSM0035657302325IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 663 aa     Download sequence    Send to blast
MKGMNGLSVE TVDSFSSLLE FAANNDVEAF RRSIELDLSG VDEAGPWYVR KKGSKQIIQE  60
ERTPLMVAAM YGSVDVLKLI VALPEVDLNK LCGRDKWTAL HCAAFGGSVN AFHIVKLLLS  120
AGADPNIEDA YGQRPVDVIV APPLAAGAKA ALEDLLVNNT SDGSVGNCNS NASSPVLSQS  180
SSPESMSPTY SPSKFIDIPS NSISEKKQYP VDPSLPDIRN SIYSSDEFRM FSFKVRPCSR  240
AYSHDWTECP FVHPGENARR RDPRKFHYSC VPCPDFRKGA CRRGDMCEYA HGVFECWLHP  300
AQYRTRLCKD GTSCGRQVCF FAHTHEELRP LYVSTGSGVP SPRSATFMDM AAALSLLPGS  360
PTSHPAAMSP PPFNNRTLSP TANGMSHSSP AWPQPNVPTL HLPGSNFQSS RLRSSLSARD  420
IPVDDRNILL QDFDAQQRVL NDMACFSHPS NSSSMLRSCG RSKSTLTPSN LEELFSSEFG  480
SSSPRFSDQD MAPGFFSPTH NKPINNNNTN NGFSPRNVEH PLLQASFGGG GVSSSPRMMS  540
PRSLETSSSP LSAHLSAFAQ QRQMQGQGQG LGSSWDIGST RSPTVGSPHW AKWGSPNGRA  600
DWSVGGGDDQ RILKRTTPSV EQGEEPDLSW VQSLVKESSP PEILAEKPLV AAVSGEFSNI  660
RL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.N01598.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012847358.10.0PREDICTED: zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A022QP310.0A0A022QP31_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8832488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]