PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.N01461.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MYB_related
Protein Properties Length: 224aa    MW: 25852.6 Da    PI: 9.4794
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.N01461.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.46.8e-132670147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                      r +W+ +E+ ++++a +++  + Wk+I + +g  +t  q++s+ qky
  Migut.N01461.1.p 26 RESWSHQEHHKFLQALHLFDRD-WKKIEEFVG-SKTVIQIRSHAQKY 70
                      789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.53E-162076IPR009057Homeodomain-like
PROSITE profilePS5129414.5382175IPR017930Myb domain
TIGRFAMsTIGR015574.8E-162473IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.2E-62476IPR009057Homeodomain-like
SMARTSM007178.9E-92573IPR001005SANT/Myb domain
PfamPF002495.7E-112670IPR001005SANT/Myb domain
CDDcd001671.30E-62871No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MKIPSSGLDD DPNKKIRKPY TITKSRESWS HQEHHKFLQA LHLFDRDWKK IEEFVGSKTV  60
IQIRSHAQKY FLKVQKNGTT EHVPPPRPKR KASHPYPQNA PKKADIGLAC NYSSSSNEST  120
PRVWKDNETL CQVKKYRTTK VVPDFAQVYG FIGSVFDPEA SDDHLKRLKK MDPIDIETVL  180
LLMKNLCVNL ASPEFEDHVS YQNQTVCSFI YLFNFFMNKC CSI*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.N01461.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012840153.11e-168PREDICTED: protein REVEILLE 3
SwissprotQ6R0H01e-78RVE3_ARATH; Protein REVEILLE 3
TrEMBLA0A022R3921e-133A0A022R392_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9982478
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01520.16e-81MYB_related family protein
Publications ? help Back to Top
  1. Manfield IW, et al.
    Arabidopsis Co-expression Tool (ACT): web server tools for microarray-based gene expression analysis.
    Nucleic Acids Res., 2006. 34(Web Server issue): p. W504-9
    [PMID:16845059]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]
  4. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]