PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.N01420.1.p
Common NameMIMGU_mgv1a020893mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family HD-ZIP
Protein Properties Length: 407aa    MW: 45789.7 Da    PI: 5.7334
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.N01420.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.12.2e-2154109156
                       TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       +++ +++t++q++eLe+lF+++++p++++r eL+k+l+L++rqVk+WFqNrR+++k
  Migut.N01420.1.p  54 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLSLETRQVKFWFQNRRTQMK 109
                       688999***********************************************999 PP
2START103.73.2e-332474031137
                       HHHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EE CS
             START   1 elaeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....ka 79 
                       ela++a+++lvk+a+ ++p W +s      e +n +e+ ++f++  +     + +ea+r++g+v+ +   lve+l+d++ +W e+++    + 
  Migut.N01420.1.p 247 ELALAAMDDLVKMAQTDDPIWIRSNieggrEVLNLEEYSRSFSPCIGmkpngFVTEASRETGMVIINGLALVETLMDSN-KWAEMFPciiaRT 338
                       5899*********************999999999999999999888899**9***************************.************* PP

                       EEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS-- CS
             START  80 etlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkpp 137
                       +t++vis+g      galqlm+aelq+lsplvp R++ f+R+++q+ +g+w++vdvS+d  ++++
  Migut.N01420.1.p 339 TTTDVISNGmggtrnGALQLMYAELQVLSPLVPvREVNFLRFCKQHAEGVWAVVDVSIDAIRENS 403
                       **********************************************************9877765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.84E-2141111IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-2146111IPR009057Homeodomain-like
PROSITE profilePS5007117.63751111IPR001356Homeobox domain
SMARTSM003891.9E-1952115IPR001356Homeobox domain
CDDcd000861.95E-1854111No hitNo description
PfamPF000466.4E-1954109IPR001356Homeobox domain
PROSITE patternPS00027086109IPR017970Homeobox, conserved site
PROSITE profilePS5084825.045238407IPR002913START domain
SuperFamilySSF559613.11E-17240397No hitNo description
CDDcd088759.51E-79242407No hitNo description
PfamPF018523.1E-26247403IPR002913START domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MEGQGEVRIE ENYESSNVNG RRSREDEHES RSGSDKRGGG SGDDLDAADK PPRKKRYHRH  60
TPQQIQELES LFKECPHPDE KQRLELSKRL SLETRQVKFW FQNRRTQMKT QIERHENSIL  120
RQENDKLRAE NMSIRDAMRN PICTNCGGPA MIGEISIEEQ HLRIENARLK DELDRVCSLA  180
GKFLGRPVSS NGPPMPNSSL ELGFSLPMGP HDFVNSPLPV MQPNNNNNNP IKGTTIERSL  240
ERSMYLELAL AAMDDLVKMA QTDDPIWIRS NIEGGREVLN LEEYSRSFSP CIGMKPNGFV  300
TEASRETGMV IINGLALVET LMDSNKWAEM FPCIIARTTT TDVISNGMGG TRNGALQLMY  360
AELQVLSPLV PVREVNFLRF CKQHAEGVWA VVDVSIDAIR ENSGGAP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.N01420.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012840139.10.0PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like
SwissprotQ0WV120.0ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLA0A022R5Y70.0A0A022R5Y7_ERYGU; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16262465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.21e-180HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]