PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Migut.N01353.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 326aa MW: 35228.9 Da PI: 6.8846 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11 | 0.0013 | 249 | 269 | 1 | 21 |
EEETTTTEEESSHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHir 21 +kC++C+++Fs+ L H+r Migut.N01353.1.p 249 HKCNICSRVFSSGQALGGHMR 269 79************9999998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.66 | 82 | 109 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.16 | 82 | 104 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 5.7E-6 | 83 | 104 | No hit | No description |
Pfam | PF13912 | 6.7E-6 | 84 | 106 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 0.001 | 84 | 104 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 84 | 104 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.7E-6 | 175 | 202 | No hit | No description |
Pfam | PF13912 | 4.6E-9 | 179 | 203 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 2.5 | 180 | 202 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.034 | 180 | 207 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 182 | 202 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.79E-6 | 247 | 275 | No hit | No description |
Pfam | PF13912 | 9.1E-13 | 249 | 273 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.014 | 249 | 271 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.325 | 249 | 276 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 0.001 | 249 | 272 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 251 | 271 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0048235 | Biological Process | pollen sperm cell differentiation | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 326 aa Download sequence Send to blast |
METNHSSSIP SDFRPPTLSS GHVIGEPSSS SSPFHPTTLI FNPRHQTKKK RSKFIRIDAT 60 AAGLHSTKPT RKPDPSAPKI TPPCTECGRK FWSSKALFGH MRCHPERQWR GINPPPNFRR 120 TAAETISDER DYLYSSSLLT EEDHEVAACL LMLAHSAAAP PPEYSDSAGQ HIVDGNCGRF 180 ECASCKKVFG SHQALGGHRA SHKNVKGCYA ITRNNNSTAA GGGDHHQEQE EGEEELEWYS 240 EDNNNNGGHK CNICSRVFSS GQALGGHMRC HWDKEEARVF GGFDLNLSGT AGGATTTPPP 300 PPPLPPVVDD DGDASSPYCS GMALD* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Mediates the regulation of male germ cell division by DUO1. {ECO:0000269|PubMed:24876252}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Migut.N01353.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Activated by the transcription factor DUO1. {ECO:0000269|PubMed:21285328}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012833710.1 | 0.0 | PREDICTED: zinc finger protein ZAT3 | ||||
Swissprot | O65499 | 3e-77 | ZAT3_ARATH; Zinc finger protein ZAT3 | ||||
TrEMBL | A0A022RKG9 | 0.0 | A0A022RKG9_ERYGU; Uncharacterized protein (Fragment) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6385 | 5 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G35280.1 | 4e-78 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Migut.N01353.1.p |