PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.N01194.2.p
Common NameLOC105952088, MIMGU_mgv1a006218mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family B3
Protein Properties Length: 393aa    MW: 44315.3 Da    PI: 6.365
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.N01194.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.17.7e-1439125398
                       EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                       k l+  d++ ++   +p++f+++h   + +++t++l  e+ ++++ ++   k++    l++GWk F+  ++L egD vvF+l++  +f  +v 
  Migut.N01194.2.p  39 KRLIDLDNMHKN-NGVPRQFCDDHL--PMKDVTIVLIGENEKEFDTRYLAAKSG----LSGGWKFFAAGHKLIEGDAVVFQLIEPCKF--KVY 122
                       556667777776.578******994..34679****************555555....9***********************998888..777 PP

                       EE- CS
                B3  96 vfr 98 
                       ++r
  Migut.N01194.2.p 123 IVR 125
                       665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100172.25E-1530125No hitNo description
SMARTSM010195.3E-1032127IPR003340B3 DNA binding domain
PROSITE profilePS5086310.39136127IPR003340B3 DNA binding domain
PfamPF023629.1E-1139125IPR003340B3 DNA binding domain
SuperFamilySSF1019361.63E-1548125IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.6E-1448125IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MAISSKNDSN RDPHSSSSSS KSKLKQKNTW EFKKQLVEKR LIDLDNMHKN NGVPRQFCDD  60
HLPMKDVTIV LIGENEKEFD TRYLAAKSGL SGGWKFFAAG HKLIEGDAVV FQLIEPCKFK  120
VYIVRDRSLS EADGAISLLN LDSNPDQIKP LKVEEPEENA DIKETTTTTS DKYPDPLVED  180
NNHPKKKKMK KIIRNTENSN AEMSDRIKFS ESPLDFKSVK CFQDFSIHFN GLILDSEIPS  240
HLKTKYYELC KSQNTFLHEN LLQGLNSKLV AGMISETVNI ADAVRACKAS TAHEHLESWD  300
RTLKAFEDLG MAVGPVRGRI NELVSLYSEP RTRIIESMRN QRDEAQVVIR GLSERLSIVR  360
SCVEKLDADI DALEAKNESL GLVFEEIASA PW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.N01194.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012831049.10.0PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X2
TrEMBLA0A022RSC40.0A0A022RSC4_ERYGU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-23B3 family protein