PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.N01193.4.p

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

Protein Properties

Length: 361aa MW: 40875.6 Da PI: 6.4313

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.N01193.4.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	57	3.5e-18	33	121	1	97
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+ l++s+v+ + rl lpk+f+++h k +s l+l de+ r+++ k+ +++r lt+GWk+F a++L egD++vF+l++ +f + Migut.N01193.4.p 33 FLRRLLKSHVTGEFRLNLPKPFCDAHLPK--QSCVLVLSDENDREYNTKY--AVGKNR--LTSGWKSFSIAHKLLEGDILVFQLIEPCKF--K 117 6677899*****************533..6679***********..666655..**********************998888..6 PP EEEE CS B3 94 vkvf 97 v ++ Migut.N01193.4.p 118 VYIV 121 6665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.22E-20	30	122	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	7.74E-25	31	122	No hit	No description
Gene3D	G3DSA:2.40.330.10	7.9E-20	31	123	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	1.4E-15	33	121	IPR003340	B3 DNA binding domain
SMART	SM01019	1.7E-18	33	124	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	13.267	33	124	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
MDLINQQKIS CVDESSSAMD RAQAVATNLY PNFLRRLLKS HVTGEFRLNL PKPFCDAHLP 60 KQSCVLVLSD ENDREYNTKY AVGKNRLTSG WKSFSIAHKL LEGDILVFQL IEPCKFKVYI 120 VKATRLTQVD GATTTALPNQ NFHPKSIEAE PEQENTNPTE YPHEHDYYSE IANGKRSSEY 180 SLINVKDVKG FKDFTIYVDG ISIDSEMPIQ CKAKYYELCK SRNMFLHENL VQGLNGKLAA 240 EMISETIKIA DAIRAVDSKT APARMEGWDK TLKAFEDLGM VVGFLRVRIH ELLSISRENQ 300 ASVRLKRVER DGAEEEMRAL DVKLSRVKTR IEKIDSEIDA LAAENEGLDP VFKEIAHCPW 360 *

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

MDLINQQKIS CVDESSSAMD RAQAVATNLY PNFLRRLLKS HVTGEFRLNL PKPFCDAHLP  60
KQSCVLVLSD ENDREYNTKY AVGKNRLTSG WKSFSIAHKL LEGDILVFQL IEPCKFKVYI  120
VKATRLTQVD GATTTALPNQ NFHPKSIEAE PEQENTNPTE YPHEHDYYSE IANGKRSSEY  180
SLINVKDVKG FKDFTIYVDG ISIDSEMPIQ CKAKYYELCK SRNMFLHENL VQGLNGKLAA  240
EMISETIKIA DAIRAVDSKT APARMEGWDK TLKAFEDLGM VVGFLRVRIH ELLSISRENQ  300
ASVRLKRVER DGAEEEMRAL DVKLSRVKTR IEKIDSEIDA LAAENEGLDP VFKEIAHCPW  360
*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.N01193.4.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012831051.1	0.0	PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X2
TrEMBL	A0A022RUQ1	0.0	A0A022RUQ1_ERYGU; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	3e-30	B3 family protein

Link Out ? help Back to Top
Phytozome	Migut.N01193.4.p