PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.N01193.3.p

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

Protein Properties

Length: 364aa MW: 41204.1 Da PI: 6.6048

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.N01193.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	57	3.6e-18	33	121	1	97
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+ l++s+v+ + rl lpk+f+++h k +s l+l de+ r+++ k+ +++r lt+GWk+F a++L egD++vF+l++ +f + Migut.N01193.3.p 33 FLRRLLKSHVTGEFRLNLPKPFCDAHLPK--QSCVLVLSDENDREYNTKY--AVGKNR--LTSGWKSFSIAHKLLEGDILVFQLIEPCKF--K 117 6677899*****************533..6679***********..666655..**********************998888..6 PP EEEE CS B3 94 vkvf 97 v ++ Migut.N01193.3.p 118 VYIV 121 6665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.24E-20	30	122	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	7.91E-25	31	122	No hit	No description
Gene3D	G3DSA:2.40.330.10	8.0E-20	31	123	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	1.7E-18	33	124	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	13.267	33	124	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.4E-15	33	121	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence Send to blast
MDLINQQKIS CVDESSSAMD RAQAVATNLY PNFLRRLLKS HVTGEFRLNL PKPFCDAHLP 60 KQSCVLVLSD ENDREYNTKY AVGKNRLTSG WKSFSIAHKL LEGDILVFQL IEPCKFKVYI 120 VKATRLTQVD GATTTALPNQ NFHPKSIEAV KTEPEQENTN PTEYPHEHDY YSEIANGKRS 180 SEYSLINVKD VKGFKDFTIY VDGISIDSEM PIQCKAKYYE LCKSRNMFLH ENLVQGLNGK 240 LAAEMISETI KIADAIRAVD SKTAPARMEG WDKTLKAFED LGMVVGFLRV RIHELLSISR 300 ENQASVRLKR VERDGAEEEM RALDVKLSRV KTRIEKIDSE IDALAAENEG LDPVFKEIAH 360 CPW*

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence Send to blast

MDLINQQKIS CVDESSSAMD RAQAVATNLY PNFLRRLLKS HVTGEFRLNL PKPFCDAHLP  60
KQSCVLVLSD ENDREYNTKY AVGKNRLTSG WKSFSIAHKL LEGDILVFQL IEPCKFKVYI  120
VKATRLTQVD GATTTALPNQ NFHPKSIEAV KTEPEQENTN PTEYPHEHDY YSEIANGKRS  180
SEYSLINVKD VKGFKDFTIY VDGISIDSEM PIQCKAKYYE LCKSRNMFLH ENLVQGLNGK  240
LAAEMISETI KIADAIRAVD SKTAPARMEG WDKTLKAFED LGMVVGFLRV RIHELLSISR  300
ENQASVRLKR VERDGAEEEM RALDVKLSRV KTRIEKIDSE IDALAAENEG LDPVFKEIAH  360
CPW*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.N01193.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012831050.1	0.0	PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X1
TrEMBL	A0A022RUQ1	0.0	A0A022RUQ1_ERYGU; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	5e-30	B3 family protein

Link Out ? help Back to Top
Phytozome	Migut.N01193.3.p