PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.N01193.2.p

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

Protein Properties

Length: 346aa MW: 39253.9 Da PI: 6.9989

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.N01193.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	57.1	3.3e-18	15	103	1	97
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+ l++s+v+ + rl lpk+f+++h k +s l+l de+ r+++ k+ +++r lt+GWk+F a++L egD++vF+l++ +f + Migut.N01193.2.p 15 FLRRLLKSHVTGEFRLNLPKPFCDAHLPK--QSCVLVLSDENDREYNTKY--AVGKNR--LTSGWKSFSIAHKLLEGDILVFQLIEPCKF--K 99 6677899*****************533..6679***********..666655..**********************998888..6 PP EEEE CS B3 94 vkvf 97 v ++ Migut.N01193.2.p 100 VYIV 103 6665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.12E-20	12	104	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	7.3E-20	13	105	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.05E-24	13	104	No hit	No description
Pfam	PF02362	1.3E-15	15	103	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	13.267	15	106	IPR003340	B3 DNA binding domain
SMART	SM01019	1.7E-18	15	106	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MDRAQAVATN LYPNFLRRLL KSHVTGEFRL NLPKPFCDAH LPKQSCVLVL SDENDREYNT 60 KYAVGKNRLT SGWKSFSIAH KLLEGDILVF QLIEPCKFKV YIVKATRLTQ VDGATTTALP 120 NQNFHPKSIE AVKTEPEQEN TNPTEYPHEH DYYSEIANGK RSSEYSLINV KDVKGFKDFT 180 IYVDGISIDS EMPIQCKAKY YELCKSRNMF LHENLVQGLN GKLAAEMISE TIKIADAIRA 240 VDSKTAPARM EGWDKTLKAF EDLGMVVGFL RVRIHELLSI SRENQASVRL KRVERDGAEE 300 EMRALDVKLS RVKTRIEKID SEIDALAAEN EGLDPVFKEI AHCPW*

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MDRAQAVATN LYPNFLRRLL KSHVTGEFRL NLPKPFCDAH LPKQSCVLVL SDENDREYNT  60
KYAVGKNRLT SGWKSFSIAH KLLEGDILVF QLIEPCKFKV YIVKATRLTQ VDGATTTALP  120
NQNFHPKSIE AVKTEPEQEN TNPTEYPHEH DYYSEIANGK RSSEYSLINV KDVKGFKDFT  180
IYVDGISIDS EMPIQCKAKY YELCKSRNMF LHENLVQGLN GKLAAEMISE TIKIADAIRA  240
VDSKTAPARM EGWDKTLKAF EDLGMVVGFL RVRIHELLSI SRENQASVRL KRVERDGAEE  300
EMRALDVKLS RVKTRIEKID SEIDALAAEN EGLDPVFKEI AHCPW*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.N01193.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012831050.1	0.0	PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X1
TrEMBL	A0A022RUQ1	0.0	A0A022RUQ1_ERYGU; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	2e-29	B3 family protein

Link Out ? help Back to Top
Phytozome	Migut.N01193.2.p