PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.N01193.1.p

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

Protein Properties

Length: 366aa MW: 41543.4 Da PI: 6.4311

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.N01193.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	57	3.6e-18	35	123	1	97
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+ l++s+v+ + rl lpk+f+++h k +s l+l de+ r+++ k+ +++r lt+GWk+F a++L egD++vF+l++ +f + Migut.N01193.1.p 35 FLRRLLKSHVTGEFRLNLPKPFCDAHLPK--QSCVLVLSDENDREYNTKY--AVGKNR--LTSGWKSFSIAHKLLEGDILVFQLIEPCKF--K 119 6677899*****************533..6679***********..666655..**********************998888..6 PP EEEE CS B3 94 vkvf 97 v ++ Migut.N01193.1.p 120 VYIV 123 6665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.24E-20	32	124	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.25E-24	33	124	No hit	No description
Gene3D	G3DSA:2.40.330.10	8.1E-20	33	125	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	1.7E-18	35	126	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.4E-15	35	123	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	13.267	35	126	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
YLLNYFFPDY SSCVDESSSA MDRAQAVATN LYPNFLRRLL KSHVTGEFRL NLPKPFCDAH 60 LPKQSCVLVL SDENDREYNT KYAVGKNRLT SGWKSFSIAH KLLEGDILVF QLIEPCKFKV 120 YIVKATRLTQ VDGATTTALP NQNFHPKSIE AVKTEPEQEN TNPTEYPHEH DYYSEIANGK 180 RSSEYSLINV KDVKGFKDFT IYVDGISIDS EMPIQCKAKY YELCKSRNMF LHENLVQGLN 240 GKLAAEMISE TIKIADAIRA VDSKTAPARM EGWDKTLKAF EDLGMVVGFL RVRIHELLSI 300 SRENQASVRL KRVERDGAEE EMRALDVKLS RVKTRIEKID SEIDALAAEN EGLDPVFKEI 360 AHCPW*

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

YLLNYFFPDY SSCVDESSSA MDRAQAVATN LYPNFLRRLL KSHVTGEFRL NLPKPFCDAH  60
LPKQSCVLVL SDENDREYNT KYAVGKNRLT SGWKSFSIAH KLLEGDILVF QLIEPCKFKV  120
YIVKATRLTQ VDGATTTALP NQNFHPKSIE AVKTEPEQEN TNPTEYPHEH DYYSEIANGK  180
RSSEYSLINV KDVKGFKDFT IYVDGISIDS EMPIQCKAKY YELCKSRNMF LHENLVQGLN  240
GKLAAEMISE TIKIADAIRA VDSKTAPARM EGWDKTLKAF EDLGMVVGFL RVRIHELLSI  300
SRENQASVRL KRVERDGAEE EMRALDVKLS RVKTRIEKID SEIDALAAEN EGLDPVFKEI  360
AHCPW*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.N01193.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012831050.1	0.0	PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X1
TrEMBL	A0A022RUQ1	0.0	A0A022RUQ1_ERYGU; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3023	23	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	9e-30	B3 family protein

Link Out ? help Back to Top
Phytozome	Migut.N01193.1.p