PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.N01192.2.p | ||||||||
Common Name | MIMGU_mgv1a007604mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | B3 | ||||||||
Protein Properties | Length: 396aa MW: 45578.2 Da PI: 8.8346 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 55.5 | 1.1e-17 | 48 | 138 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f k + s+v ++ l+lpk f+++h k ++ ++++ de+ +s+++++ +r ++r+ lt+GW++F a+ L egD++vF+l++ +f + Migut.N01192.2.p 48 FAKPMQISHVARKFELTLPKLFCDAHLPK--KDGMIVFLDENDQSYNINYVVRV-RDRFDLTGGWRSFSTAHALLEGDVLVFQLIEPCKF--K 135 7899999*******************534..3449***************6555.5699*************************998888..6 PP EEE CS B3 94 vkv 96 v + Migut.N01192.2.p 136 VYI 138 655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 9.5E-20 | 41 | 140 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.65E-21 | 41 | 140 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.61E-22 | 46 | 140 | No hit | No description |
SMART | SM01019 | 1.1E-14 | 48 | 142 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.267 | 48 | 142 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.6E-15 | 48 | 138 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 396 aa Download sequence Send to blast |
MDLTNQKKKN GDSVSTDRPY KRSFGLRSSA MNRAQTIQAN LSPHFPSFAK PMQISHVARK 60 FELTLPKLFC DAHLPKKDGM IVFLDENDQS YNINYVVRVR DRFDLTGGWR SFSTAHALLE 120 GDVLVFQLIE PCKFKVYIVK DTRLTKVDGP NRDRFHRKPI KAEPEEENSD PIERTRNKYL 180 ERISQKTKTD RTTPIRKPAR DEYASYSDSF GTERSLEYSL LGFKDFKDFS IYIDGLTIDS 240 EIPTDCKEKY YGLCKSRNMF LHENLVQGLN GKLAVEMISE TIRIADAIRA VDSKTAPGLM 300 EGWDKTLKGF EEIGMVVGFL RVRIRKLIRV FREYRAGIEL KRIERDEAEE ERIALNVKLW 360 RVENWIGEID AEIDALSAKN ESMGPVLKEI ACAPW* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.N01192.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012831054.1 | 0.0 | PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X3 | ||||
TrEMBL | A0A022RRP6 | 0.0 | A0A022RRP6_ERYGU; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 5e-26 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.N01192.2.p |