PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.N01191.1.p

Common Name

MIMGU_mgv1a024973mg

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

Protein Properties

Length: 368aa MW: 42175.6 Da PI: 8.8408

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.N01191.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	56.3	5.9e-18	34	119	1	92
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k+l +s+v+++ +l+lpk+f+ ++ ++++ ++l de+ r ++ ++ +s ++l++GWk+F a++L+egD++vF+l++ +f+ Migut.N01191.1.p 34 FLKTLRKSYVTRKFWLILPKPFCHANI--PKKDGWMVLLDENDRGYKTEY--LVGS--HTLSSGWKSFSIAHKLREGDVLVFQLIEPCKFKI 119 89*******************6663..345558***********..7776..88**********************98788844 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.5E-19	26	125	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	4.32E-22	27	123	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.60E-23	32	121	No hit	No description
SMART	SM01019	1.1E-18	34	125	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.8E-15	34	120	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.915	34	125	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence Send to blast
GDSVTVSTNR PIVCSCMDRA HAIQANLSPN FPNFLKTLRK SYVTRKFWLI LPKPFCHANI 60 PKKDGWMVLL DENDRGYKTE YLVGSHTLSS GWKSFSIAHK LREGDVLVFQ LIEPCKFKIY 120 IAKATTTLPN QDHFHREPVE AVKPEPEEEN TDNTGTRRDK YLEYRSKKKE KIIPISKPNG 180 IRSSECSLVS FKDIKGFKDF SIYVDARILD SEIPTHCKAK YYELCKSQNM FLHENIVQGL 240 NGKLAVEMIS ELIKIADSIR AADSKTGTDR MEGWDKTLKA FEDLGMVVGF LRVRIRKLIR 300 VFREYGADIE LMRIERDEAE EERIALNVKL WRVENRIGQI DDEIDALRSV KNEGVGPVFK 360 KIACAPW*

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence Send to blast

GDSVTVSTNR PIVCSCMDRA HAIQANLSPN FPNFLKTLRK SYVTRKFWLI LPKPFCHANI  60
PKKDGWMVLL DENDRGYKTE YLVGSHTLSS GWKSFSIAHK LREGDVLVFQ LIEPCKFKIY  120
IAKATTTLPN QDHFHREPVE AVKPEPEEEN TDNTGTRRDK YLEYRSKKKE KIIPISKPNG  180
IRSSECSLVS FKDIKGFKDF SIYVDARILD SEIPTHCKAK YYELCKSQNM FLHENIVQGL  240
NGKLAVEMIS ELIKIADSIR AADSKTGTDR MEGWDKTLKA FEDLGMVVGF LRVRIRKLIR  300
VFREYGADIE LMRIERDEAE EERIALNVKL WRVENRIGQI DDEIDALRSV KNEGVGPVFK  360
KIACAPW*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.N01191.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012830974.1	0.0	PREDICTED: B3 domain-containing protein Os01g0234100-like
Refseq	XP_012830975.1	0.0	PREDICTED: B3 domain-containing protein Os01g0234100-like
TrEMBL	A0A022RQA3	0.0	A0A022RQA3_ERYGU; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3023	23	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	4e-27	B3 family protein

Link Out ? help Back to Top
Phytozome	Migut.N01191.1.p