PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.N00329.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family GATA
Protein Properties Length: 279aa    MW: 29823.6 Da    PI: 8.2094
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.N00329.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.61.5e-17193227135
              GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                       C +C++ kTp+WR gp g+ktLCnaCG++y++ +l
  Migut.N00329.1.p 193 CWHCQADKTPQWRAGPMGPKTLCNACGVRYKSGRL 227
                       99*****************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.477187223IPR000679Zinc finger, GATA-type
SMARTSM004014.5E-16187241IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.42E-15188250No hitNo description
Gene3DG3DSA:3.30.50.101.1E-14190225IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.79E-12192240No hitNo description
PfamPF003202.7E-15193227IPR000679Zinc finger, GATA-type
PROSITE patternPS003440193218IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MESLVTEAGF VVDDDLLNFC LEGEEEPAAA TALCRAAHTG SFPEIVEEEL EWLSNKDAFP  60
AVETCFGILS DNPGLILNHQ SPVSVLENNN SSISAGSNGG SSGGSIASCC NSIKVPTKYP  120
VRARSKRRRR RRTGFTDLPS QQQCVWMNQV NIVVKNKKQE SQLSLPPLPL AAAATADSGG  180
GTTGGGGGMG RRCWHCQADK TPQWRAGPMG PKTLCNACGV RYKSGRLLPE YRPANSPTFS  240
SNLHSNSHRK VVEMRRQKQA VVVPGDGIEV NVSCGYFG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123131RSKRRRRRR
2125130KRRRRR
3125131KRRRRRR
4127132RRRRRT
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.N00329.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012842907.10.0PREDICTED: GATA transcription factor 1-like
TrEMBLA0A022QYG31e-173A0A022QYG3_ERYGU; Uncharacterized protein (Fragment)
STRINGMigut.N00329.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40762445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.19e-40GATA transcription factor 1