PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.N00138.1.p
Common NameMIMGU_mgv1a001822mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family FAR1
Protein Properties Length: 771aa    MW: 88172.5 Da    PI: 8.2608
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.N00138.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1721.3e-2252127190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                       +fYn+YA++vGF+vr+ + ++s+ +g++++r+fvCskeg++++              +rtgC a ++v+k ++gkw ++++++eHnHe+ 
  Migut.N00138.1.p  52 EFYNSYATQVGFKVRIGQLYRSRVDGSVISRRFVCSKEGFQTN--------------SRTGCPAFIRVQKADSGKWAIANIKKEHNHEFE 127
                       6***************************************987..............589***************************986 PP
2FAR163.27.5e-20203277189
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                       kfY +YA+++GF++r+ +  +sk++g+it+r+fvCskeg++++              +r+gC a ++++++++g+w+v++l++eH+He+
  Migut.N00138.1.p 203 KFYYAYASNMGFRIRIGQLFRSKHDGSITSRRFVCSKEGHQHP--------------SRVGCGAYMRIQRQESGRWVVDRLQKEHSHEV 277
                       6**************************************9998..............4899**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.9E-1852126IPR004330FAR1 DNA binding domain
PfamPF031012.2E-15203277IPR004330FAR1 DNA binding domain
PfamPF105513.4E-28379471IPR018289MULE transposase domain
PROSITE profilePS5096610.435656692IPR007527Zinc finger, SWIM-type
PfamPF044344.1E-8662689IPR007527Zinc finger, SWIM-type
SMARTSM005756.1E-8667694IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 771 aa     Download sequence    Send to blast
MNREELGNIM TVRTRPAALA VGRSNGHWDD DGQSRIEPHA GLEFDSAEEA QEFYNSYATQ  60
VGFKVRIGQL YRSRVDGSVI SRRFVCSKEG FQTNSRTGCP AFIRVQKADS GKWAIANIKK  120
EHNHEFETSG EICPPKIQRK SFPTPRSSSG GASRTGIRTH DDDSPSGVVD MKRLKKEEMD  180
GMIGPIGEPY KGLEFNSANE AYKFYYAYAS NMGFRIRIGQ LFRSKHDGSI TSRRFVCSKE  240
GHQHPSRVGC GAYMRIQRQE SGRWVVDRLQ KEHSHEVDAR ADNSRTVTVA STGYREEGSS  300
VLENLDLVET NGGLSLVKRV RESNINGDWY SVLLEYFQSR QAEDTGFFYG VEMREGKGMN  360
MFWADARSRF SCTQFGDAIV FDTTYRRGSY LVPFASFLGV NHHRQPVLLG CALVADESEA  420
SFTWIFQAWV RAMSGHRPVS IIADQDRPIQ NAIAQVFPAT HHRFSTWQIL AKEQENLGAL  480
LSMDAEFKYE YETCIFQSQT ASEFDSAWNM LMNKYNLREN VWFKEMYRMR KSWIPLHIKG  540
TFFAGIPVDG GLKSYFSTLL TAQTPLNEFV ARYEKALEQR REEEKKEDFN SFNLQAVLHT  600
KDPIEEQCRR LYTITMFKVF QKELLECYSY VGIKINVEGA ISRYLVQKCG NGDERNTVAF  660
NASNLNISCS CKMFEFEGVL CRHALKVFQI MNIRELPSRY ILHRWSKNAK YGILRDADSG  720
GSGQDFKALM LWSLREEAQN YIEAGAASLE RYKLAFEIMQ EGRRNLCWQN *
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.N00138.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012841175.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 7-like
SwissprotQ9M8J30.0FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBLA0A022RZV50.0A0A022RZV5_ERYGU; Uncharacterized protein
STRINGMigut.N00138.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA73472130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.10.0FAR1-related sequence 7
Publications ? help Back to Top
  1. Ritter A, et al.
    The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis.
    Nat Commun, 2017. 8: p. 15235
    [PMID:28492275]
  2. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]