PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.M01435.1.p

Common Name

LOC105969060, MIMGU_mgv1a002245mg

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

FAR1

Protein Properties

Length: 697aa MW: 80776.3 Da PI: 6.6686

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.M01435.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.6	3.3e-21	68	159	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 ++Y ++A++ GFs+rk++s+ s + g ++kr+fvC+++g++ +kk+ +++r+r++ r+gC+ k+ ++ke ++w+v ++++ HnHel Migut.M01435.1.p 68 DYYGNFARKNGFSIRKERSRLSPQLG-VYKRDFVCYRSGFAPARKKQIGEHQRERKSVRCGCDSKMYLSKEIvdgVSQWYVVQFSNVHNHELL 159 59******************8888.**************************************998767789***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.1E-19	68	159	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.9E-20	291	383	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.138	563	598	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	7.7E-8	570	597	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.5E-4	573	600	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 697 aa Download sequence Send to blast
MVSVQSKTVW IKRQQCPCGD WKCFVTYEGD TNETNVGSRL IKNDSFPTET MISPYVGMVF 60 KSDDEAFDYY GNFARKNGFS IRKERSRLSP QLGVYKRDFV CYRSGFAPAR KKQIGEHQRE 120 RKSVRCGCDS KMYLSKEIVD GVSQWYVVQF SNVHNHELLE DDQVRLLPAY RKIHEADQER 180 ILLLSKAGFP IHRIVKVLEL EKGIQGGHLS FLERDVRNFI QTRKRIVQES DALLAERREI 240 DTVDLLEACR TSKEADPYFV YDVAFDENDR VENVAWSCGD SVHAYDMFGD VVYFDSTYRS 300 MNYGLSFGAW LGINNHGKIL FFGCALLQDE NPRSFAWALQ AFLRFMKGRC PQTIITDIDP 360 GLREAITSEL PNTKHFISLY NMMPRISTWF SLPLGPRFPE FKYEFEELCR LKGTDEFEFR 420 WNNMVSHFGI NSDKHIALLF SLRMCWALPY TRGCFLARMD STSYWKSVDV FLKGVIETQT 480 CLRGFLEQMG LVSHCKMQSH EEAQFMHLKT CLPIEEHARS ILTPFAFNAV QQEMVLAMEY 540 AASEMSDGSH IVRHFKKVDG EHLVIWVPED EQIHCSCKAF ESTGILCRHA LRVLLLKNYF 600 QIPSKYLLNR WRQEESSSVL RYGEQSNLKN SDEWYREFNL LTGTLFSEAA LTKERSDFVR 660 RELTEELTRL VGQVREMPAV DEVGMDIITL SPTNVL*

Sequence ? help Back to Top

Protein Sequence Length: 697 aa Download sequence Send to blast

MVSVQSKTVW IKRQQCPCGD WKCFVTYEGD TNETNVGSRL IKNDSFPTET MISPYVGMVF  60
KSDDEAFDYY GNFARKNGFS IRKERSRLSP QLGVYKRDFV CYRSGFAPAR KKQIGEHQRE  120
RKSVRCGCDS KMYLSKEIVD GVSQWYVVQF SNVHNHELLE DDQVRLLPAY RKIHEADQER  180
ILLLSKAGFP IHRIVKVLEL EKGIQGGHLS FLERDVRNFI QTRKRIVQES DALLAERREI  240
DTVDLLEACR TSKEADPYFV YDVAFDENDR VENVAWSCGD SVHAYDMFGD VVYFDSTYRS  300
MNYGLSFGAW LGINNHGKIL FFGCALLQDE NPRSFAWALQ AFLRFMKGRC PQTIITDIDP  360
GLREAITSEL PNTKHFISLY NMMPRISTWF SLPLGPRFPE FKYEFEELCR LKGTDEFEFR  420
WNNMVSHFGI NSDKHIALLF SLRMCWALPY TRGCFLARMD STSYWKSVDV FLKGVIETQT  480
CLRGFLEQMG LVSHCKMQSH EEAQFMHLKT CLPIEEHARS ILTPFAFNAV QQEMVLAMEY  540
AASEMSDGSH IVRHFKKVDG EHLVIWVPED EQIHCSCKAF ESTGILCRHA LRVLLLKNYF  600
QIPSKYLLNR WRQEESSSVL RYGEQSNLKN SDEWYREFNL LTGTLFSEAA LTKERSDFVR  660
RELTEELTRL VGQVREMPAV DEVGMDIITL SPTNVL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.M01435.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012849238.1	0.0	PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 isoform X1
Refseq	XP_012849239.1	0.0	PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 isoform X1
Refseq	XP_012849241.1	0.0	PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 isoform X1
Swissprot	Q9LKR4	0.0	FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBL	A0A022QJC3	0.0	A0A022QJC3_ERYGU; Uncharacterized protein
STRING	Migut.M01435.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7532	19	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	0.0	FAR1-related sequence 10

Link Out ? help Back to Top
Phytozome	Migut.M01435.1.p
Entrez Gene	105969060

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]