PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.M00219.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | B3 | ||||||||
Protein Properties | Length: 123aa MW: 14096 Da PI: 4.5091 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 62.5 | 6.8e-20 | 16 | 106 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 ffkv + s r+++p +f+e++g k ++ +tl+++sg s++ + +k + +l+kGW eFvk+n ++egDf++F++ g+s f + Migut.M00219.1.p 16 FFKVH--VSEIYSERMRIPPDFIEKFGRK--KPAIVTLKTTSGISFRADM--KKINECWFLEKGWPEFVKENSVEEGDFLTFSYAGKSVF--N 100 66666..66677789***********988..5669***************..66666678*************************99999..9 PP EEEE-S CS B3 94 vkvfrk 99 vkvf k Migut.M00219.1.p 101 VKVFAK 106 999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.18E-24 | 10 | 109 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.5E-23 | 10 | 109 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.04E-16 | 14 | 104 | No hit | No description |
PROSITE profile | PS50863 | 13.07 | 14 | 107 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.2E-18 | 16 | 107 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.3E-18 | 16 | 106 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 123 aa Download sequence Send to blast |
MEDQITVNDD DDLPEFFKVH VSEIYSERMR IPPDFIEKFG RKKPAIVTLK TTSGISFRAD 60 MKKINECWFL EKGWPEFVKE NSVEEGDFLT FSYAGKSVFN VKVFAKNGCI KSVDNLEEDE 120 PS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.M00219.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012844349.1 | 1e-83 | PREDICTED: B3 domain-containing protein At1g16640-like | ||||
TrEMBL | A0A022QSB2 | 4e-75 | A0A022QSB2_ERYGU; Uncharacterized protein (Fragment) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12633 | 13 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34400.1 | 2e-17 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.M00219.1.p |