PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Migut.M00046.2.p | ||||||||
Common Name | LOC105951912, MIMGU_mgv1a002473mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 593aa MW: 68916.6 Da PI: 7.1991 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 71.8 | 1.6e-22 | 67 | 158 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 ++Y+++A++ GFs+rk++s++s + g +++r+fvC+++g+++++kk ++++ r r++ r+gC+ak+ ++ke +w+++++++ HnHel Migut.M00046.2.p 67 EYYSNFARKNGFSIRKARSTESPNLG-VYRRDFVCYRSGFNQPRKKVNVEHPRDRKSLRCGCDAKFYLTKEIidgVTQWYISQFSNVHNHELL 158 69********************7777.*******************************************98866789*************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.6E-20 | 67 | 158 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 6.2E-19 | 290 | 382 | IPR018289 | MULE transposase domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 593 aa Download sequence Send to blast |
MAVTNIWVKR QQCPCGDWKC FVNYEADRDQ ATPVSQSVTN GCLSFPSQEI FTPYVGQVFK 60 TDEEAFEYYS NFARKNGFSI RKARSTESPN LGVYRRDFVC YRSGFNQPRK KVNVEHPRDR 120 KSLRCGCDAK FYLTKEIIDG VTQWYISQFS NVHNHELLED EQVRLLPAYR KIEEADQERI 180 LLLSKAGFPV NRILKVLELE KGVQPGQLPF IEKDVRNFVR SCKKTVQEND TMVTMKRESD 240 LLELLEACKV EAERDDGFVY NFTTDDNGKV ENIAWTYGDS IEAFSLFGDV VTIDTSYRSV 300 TYSMILGMWF GIDNHGRPIF FGCTLLQDES SKSFSWALQV FVGFMRGRRP EIVVTDMDSG 360 LRDALLIEMP DTKQIICIRQ ILSRMSSWFS LQLGLQYSEF KSEFDSLCHL ENVEDFEHKW 420 NHLVAQFGIA SDKHISLLFS YRTSWPFCYV RNFFLARTTN PEYSKSVEKF LKNVVSLQSS 480 LQCFFKQIAI AAKSRSEKRK EEEVFYLPIK TCMPLEEHAR NILTPFAFSA LQNEIVFSMH 540 YSMTEMANGS YLARHYKKTE RECLVIWIPD DEQVANRWSK GYKWKCSRIS FA* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Migut.M00046.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC182567 | 0.0 | AC182567.2 Erythranthe guttata clone MGBa-50E20, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012830844.1 | 0.0 | PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 isoform X2 | ||||
Swissprot | Q9LKR4 | 0.0 | FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10 | ||||
TrEMBL | A0A022RRS6 | 0.0 | A0A022RRS6_ERYGU; Uncharacterized protein | ||||
STRING | Migut.M00046.1.p | 0.0 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G28530.1 | 0.0 | FAR1-related sequence 10 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Migut.M00046.2.p |
Entrez Gene | 105951912 |
Publications ? help Back to Top | |||
---|---|---|---|
|