PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.M00046.1.p
Common NameLOC105951912, MIMGU_mgv1a002473mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family FAR1
Protein Properties Length: 670aa    MW: 78115.2 Da    PI: 7.7165
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.M00046.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR171.51.9e-2267158190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 
                       ++Y+++A++ GFs+rk++s++s + g +++r+fvC+++g+++++kk ++++ r r++ r+gC+ak+ ++ke      +w+++++++ HnHel 
  Migut.M00046.1.p  67 EYYSNFARKNGFSIRKARSTESPNLG-VYRRDFVCYRSGFNQPRKKVNVEHPRDRKSLRCGCDAKFYLTKEIidgVTQWYISQFSNVHNHELL 158
                       69********************7777.*******************************************98866789*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.1E-2067158IPR004330FAR1 DNA binding domain
PfamPF105517.5E-19290382IPR018289MULE transposase domain
PROSITE profilePS509669.841564599IPR007527Zinc finger, SWIM-type
PfamPF044344.8E-6568595IPR007527Zinc finger, SWIM-type
SMARTSM005750.0013574601IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 670 aa     Download sequence    Send to blast
MAVTNIWVKR QQCPCGDWKC FVNYEADRDQ ATPVSQSVTN GCLSFPSQEI FTPYVGQVFK  60
TDEEAFEYYS NFARKNGFSI RKARSTESPN LGVYRRDFVC YRSGFNQPRK KVNVEHPRDR  120
KSLRCGCDAK FYLTKEIIDG VTQWYISQFS NVHNHELLED EQVRLLPAYR KIEEADQERI  180
LLLSKAGFPV NRILKVLELE KGVQPGQLPF IEKDVRNFVR SCKKTVQEND TMVTMKRESD  240
LLELLEACKV EAERDDGFVY NFTTDDNGKV ENIAWTYGDS IEAFSLFGDV VTIDTSYRSV  300
TYSMILGMWF GIDNHGRPIF FGCTLLQDES SKSFSWALQV FVGFMRGRRP EIVVTDMDSG  360
LRDALLIEMP DTKQIICIRQ ILSRMSSWFS LQLGLQYSEF KSEFDSLCHL ENVEDFEHKW  420
NHLVAQFGIA SDKHISLLFS YRTSWPFCYV RNFFLARTTN PEYSKSVEKF LKNVVSLQSS  480
LQCFFKQIAI AAKSRSEKRK EEEVFYLPIK TCMPLEEHAR NILTPFAFSA LQNEIVFSMH  540
YSMTEMANGS YLARHYKKTE RECLVIWIPD DEQVHCSCKE FEHSGVLCRH SLRVLVLKNY  600
FEIPVKYFLR RWRIDGQKVT NGNAREFHSL SESLYSESFL SKERFNFVRG ELAQLVERVR  660
SMPRRGRMH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.M00046.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1825670.0AC182567.2 Erythranthe guttata clone MGBa-50E20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012830842.10.0PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 isoform X1
RefseqXP_012830843.10.0PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 isoform X1
SwissprotQ9LKR40.0FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBLA0A022RRS60.0A0A022RRS6_ERYGU; Uncharacterized protein
STRINGMigut.M00046.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA75321927
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.10.0FAR1-related sequence 10
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]