PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.L01532.1.p

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

MYB_related

Protein Properties

Length: 266aa MW: 29206.9 Da PI: 4.7866

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.L01532.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	34.2	6e-11	5	55	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT+eE++ l d+v+++G g Wk+I + R+ ++k++w++ Migut.L01532.1.p 5 KLKWTPEEEKALRDGVARHGVGKWKSILSDPLfnhllFARSNIDLKDKWRN 55 689*************************99888898867999999999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.155	1	61	IPR017930	Myb domain
SuperFamily	SSF46689	5.38E-15	2	58	IPR009057	Homeodomain-like
SMART	SM00717	3.4E-5	4	59	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	7.7E-13	5	56	IPR009057	Homeodomain-like
Pfam	PF00249	1.8E-8	5	55	IPR001005	SANT/Myb domain
CDD	cd11660	2.95E-20	7	56	No hit	No description
SMART	SM00526	7.8E-14	115	180	IPR005818	Linker histone H1/H5, domain H15
PROSITE profile	PS51504	21.558	117	185	IPR005818	Linker histone H1/H5, domain H15
SuperFamily	SSF46785	4.24E-13	117	184	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	2.5E-13	119	183	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00538	6.4E-10	120	177	IPR005818	Linker histone H1/H5, domain H15

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006334	Biological Process	nucleosome assembly
GO:0000786	Cellular Component	nucleosome
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MGNPKLKWTP EEEKALRDGV ARHGVGKWKS ILSDPLFNHL LFARSNIDLK DKWRNMSVAI 60 GPRDKSTTQK WMFGPADSPA TSLPTAPTSS FIAPSSQDAP TDTLMLDSSK PLPGGTNASK 120 YDPLIYDALS NLKEPNGSDL VAIATYIEQI YEVPQTFKKN LRSRLNCLVK EGKLEKVGNC 180 FKTKRDDDAV VESKIPAEAD DESMDYLGDT VEEACRIAAH RIAEAENKSY AAAEAFKEAE 240 RLSILAEEAD VLVQALAELV QQYSD*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.L01532.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012848020.1	0.0	PREDICTED: telomere repeat-binding factor 4-like
TrEMBL	A0A022QPE2	1e-169	A0A022QPE2_ERYGU; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2504	23	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G17520.1	2e-47	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Migut.L01532.1.p