PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.L01347.1.p | ||||||||
Common Name | LOC105967594, MIMGU_mgv1a011043mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 295aa MW: 33614.1 Da PI: 4.3806 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.5 | 2.2e-18 | 86 | 138 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++ +eq+ Le+ F ++++ +++++LAk+lgL+ rqV +WFqNrRa+ k Migut.L01347.1.p 86 KRRLMPEQVLFLEKSFDVENKLEPDRKTQLAKQLGLQPRQVAIWFQNRRARSK 138 457889*********************************************99 PP | |||||||
2 | HD-ZIP_I/II | 120.8 | 6.9e-39 | 85 | 175 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 kkrrl eqv +LE+sF+ e+kLep+rK++la++Lglqprqva+WFqnrRAR ktk lE++y +Lk++yd+lke+ ++L k++e++++e++ Migut.L01347.1.p 85 KKRRLMPEQVLFLEKSFDVENKLEPDRKTQLAKQLGLQPRQVAIWFQNRRARSKTKVLEREYGSLKASYDKLKEDYDTLFKQNEAMKAEVD 175 9*************************************************************************************99886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.36E-18 | 72 | 140 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.649 | 80 | 140 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.8E-16 | 84 | 144 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.70E-15 | 85 | 140 | No hit | No description |
Pfam | PF00046 | 1.4E-15 | 86 | 138 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 6.5E-18 | 87 | 146 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 3.8E-6 | 111 | 120 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 115 | 138 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 3.8E-6 | 120 | 136 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 5.1E-14 | 140 | 181 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MEVDGVYEDS HVPTVFAKNE ILDSLWAPNS SPSFHGSSSM VNFEDDKNTE RERPFFDICK 60 SERFNDDDEV SYEDEYSGFH KPAGKKRRLM PEQVLFLEKS FDVENKLEPD RKTQLAKQLG 120 LQPRQVAIWF QNRRARSKTK VLEREYGSLK ASYDKLKEDY DTLFKQNEAM KAEVDLLTEK 180 LVMREKVLSE PVVAPLDLLP KNVDAASNSA KSDVFDSESS HYNTLMEGGA DYSSRVFEVE 240 GSGEFSQEEE EDGVSGLVPK IEGEEWCGDD HDLQPNSGNL GFPVQHQGTW LWQY* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.L01347.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012847654.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ATHB-54-like | ||||
Swissprot | Q02283 | 2e-40 | HAT5_ARATH; Homeobox-leucine zipper protein HAT5 | ||||
TrEMBL | A0A022QM62 | 0.0 | A0A022QM62_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA825 | 24 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 6e-41 | homeobox 1 |
Link Out ? help Back to Top | |
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Phytozome | Migut.L01347.1.p |
Entrez Gene | 105967594 |
Publications ? help Back to Top | |||
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