PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.L00993.1.p | ||||||||
Common Name | MIMGU_mgv1a025983mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 132aa MW: 14773.3 Da PI: 4.3774 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.4 | 2.5e-18 | 79 | 131 | 2 | 54 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 rk+ ++tkeq + Le+ F n++++++e+e LA +l+L+ rqV vWFqNrRa+ Migut.L00993.1.p 79 RKKLRLTKEQSRLLEQTFLHNQTLNHKEKESLAIELKLKPRQVEVWFQNRRAR 131 78889**********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 71.5 | 1.7e-23 | 79 | 131 | 1 | 53 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRAR 53 +kk+rl+keq++lLE++F ++++L++++K++la eL+l+prqv+vWFqnrRAR Migut.L00993.1.p 79 RKKLRLTKEQSRLLEQTFLHNQTLNHKEKESLAIELKLKPRQVEVWFQNRRAR 131 69****************9999******************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.1E-19 | 50 | 131 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.07E-18 | 67 | 131 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.119 | 75 | 131 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.3E-10 | 77 | 131 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.29E-18 | 78 | 131 | No hit | No description |
Pfam | PF00046 | 8.8E-16 | 79 | 131 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 132 aa Download sequence Send to blast |
MDFLAINNND SANLELTIAP PDFSLSPISF PYSSGGSGGA MKEVDINQVP SSGTEEECMQ 60 EEEEDDDEDE SPNGGPGPRK KLRLTKEQSR LLEQTFLHNQ TLNHKEKESL AIELKLKPRQ 120 VEVWFQNRRA R* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.L00993.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012833364.1 | 2e-60 | PREDICTED: homeobox-leucine zipper protein HOX3-like | ||||
Swissprot | Q8S9N6 | 3e-32 | ATB17_ARATH; Homeobox-leucine zipper protein ATHB-17 | ||||
TrEMBL | A0A022RPF7 | 8e-91 | A0A022RPF7_ERYGU; Uncharacterized protein (Fragment) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01430.1 | 2e-30 | homeobox-leucine zipper protein 17 |
Link Out ? help Back to Top | |
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Phytozome | Migut.L00993.1.p |
Publications ? help Back to Top | |||
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