PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.L00642.1.p | ||||||||
Common Name | MIMGU_mgv1a024956mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 134aa MW: 15978.5 Da PI: 9.6775 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 29 | 1.4e-09 | 6 | 50 | 3 | 47 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 i n+s+r+ f k + KA+ELS+LC++e+a+ii + +ly Migut.L00642.1.p 6 IPNESKRNEIFKKKTVRLVNKANELSTLCGVEAAIIIHKKGRRLY 50 7899999999****9*********************987766666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 12.783 | 1 | 56 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.06E-13 | 2 | 94 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.9E-11 | 6 | 50 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 134 aa Download sequence Send to blast |
MKHELIPNES KRNEIFKKKT VRLVNKANEL STLCGVEAAI IIHKKGRRLY DIGEDNAMLW 60 PSPPIFSERL HKFLNHPDSE IRRRMVKHEK FMEQIKEEER ENVSKWEMRC ELQESRQLLN 120 ELMETRSHGR LFP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.L00642.1.p |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012831259.1 | 2e-74 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A022QKY3 | 3e-92 | A0A022QKY3_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA378 | 20 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31630.1 | 2e-11 | AGAMOUS-like 86 |
Link Out ? help Back to Top | |
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Phytozome | Migut.L00642.1.p |