PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.K01342.1.p
Common NameLOC105960810, MIMGU_mgv11b024303mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family LBD
Protein Properties Length: 270aa    MW: 29835.1 Da    PI: 5.151
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.K01342.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260116.22.1e-3661081101
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                       aC aCk+++rkC+++C+l++yfpa+q p+ f++vh+lFG+snv+k+l++l++e  r+dam+s+++e+++r + Pv+G+++vi++lq ql+ + 
  Migut.K01342.1.p   6 ACGACKHQKRKCTPGCALRRYFPANQpPSIFQCVHRLFGVSNVTKILQSLQTEVeRDDAMQSIIFESKMREQFPVEGCTRVIRDLQLQLHYAL 98 
                       7*************************78**********************77766************************************** PP

            DUF260  92 aelallkeel 101
                       +el++++++l
  Migut.K01342.1.p  99 QELNRVHAQL 108
                       *****99885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.4795108IPR004883Lateral organ boundaries, LOB
PfamPF031951.8E-326105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MKEDGACGAC KHQKRKCTPG CALRRYFPAN QPPSIFQCVH RLFGVSNVTK ILQSLQTEVE  60
RDDAMQSIIF ESKMREQFPV EGCTRVIRDL QLQLHYALQE LNRVHAQLAA CRNLRGHLFM  120
NNNAQPPSAA AAADVGPTYF ESRVDPQYLS SEHPPSTNWL PGSTHFEPGS GSGSSSMPPP  180
PPPPPPQANY SNSAIQQQMG SSFGIPRRRD QDFQESVMKS TLDETLSLQI GCDRIEEASS  240
SFGIQQFPRH DQDSDETGDE ADEQETVAD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A9e-22711612121LOB family transfactor Ramosa2.1
5ly0_B9e-22711612121LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.K01342.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012840475.10.0PREDICTED: protein LATERAL ORGAN BOUNDARIES-like
TrEMBLA0A022R2180.0A0A022R218_ERYGU; Uncharacterized protein
STRINGMigut.K01342.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14492375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.11e-28LOB domain-containing protein 27