PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.K01341.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | LBD | ||||||||
Protein Properties | Length: 255aa MW: 28661.2 Da PI: 6.5033 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 120.2 | 1.1e-37 | 10 | 111 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlka 92 aCaaCk++rrkC+++C+lapyfpa+qpk+f++vh+lFG+snv+k+l++l+++ ++dam+s+++e+++r + Pv+G+++vi++l+ q++ + + Migut.K01341.1.p 10 ACAACKYQRRKCSPKCPLAPYFPANQPKTFQCVHRLFGVSNVTKTLRSLKTDIeKDDAMKSIIFESKMREQFPVEGCTRVIQDLRLQIHYALQ 102 7************************************************66644*************************************** PP DUF260 93 elallkeel 101 el++++++l Migut.K01341.1.p 103 ELNRVHAQL 111 ****99885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.537 | 9 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.6E-35 | 10 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MMVKGSTTPA CAACKYQRRK CSPKCPLAPY FPANQPKTFQ CVHRLFGVSN VTKTLRSLKT 60 DIEKDDAMKS IIFESKMREQ FPVEGCTRVI QDLRLQIHYA LQELNRVHAQ LAACRNHHLW 120 MNAQPSAAAE DDYSSTWVPA GGPPTYFESG WVDPRVSDSH PSWLPGSTRF DPGASSSNAP 180 PPTTTMPANN YHYLMNENSG GFYSDSDLSG IKEIQEQMES FGIQQFPRLD QDSDELVMKS 240 MEEKLSQIDR DHTY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-24 | 5 | 111 | 7 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-24 | 5 | 111 | 7 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.K01341.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012840473.1 | 0.0 | PREDICTED: LOB domain-containing protein 27-like | ||||
TrEMBL | A0A022R4Z6 | 1e-169 | A0A022R4Z6_ERYGU; Uncharacterized protein | ||||
STRING | Migut.K01341.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1449 | 23 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47870.1 | 3e-38 | LOB domain-containing protein 27 |
Link Out ? help Back to Top | |
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Phytozome | Migut.K01341.1.p |