PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.K01165.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | NF-YB | ||||||||
Protein Properties | Length: 221aa MW: 24557.5 Da PI: 6.5151 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 120.1 | 1e-37 | 57 | 148 | 2 | 93 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 re ++++ ian++ri+++vlPana i++dake +qec+sefi +t+ea+ +c+re rkt+ ++d+l a+a+lG+e+y+epl+++l+k+r Migut.K01165.1.p 57 REANHHMSIANITRIIRRVLPANAEITDDAKEAIQECISEFIRVITAEANVRCHREYRKTVMPEDVLAAMASLGLENYLEPLTTFLNKHRAQ 148 78999************************************************************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.2E-37 | 50 | 156 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 7.71E-30 | 61 | 160 | IPR009072 | Histone-fold |
Pfam | PF00808 | 5.1E-18 | 65 | 126 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 4.0E-12 | 90 | 108 | No hit | No description |
PRINTS | PR00615 | 4.0E-12 | 109 | 127 | No hit | No description |
PRINTS | PR00615 | 4.0E-12 | 128 | 146 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MERGRCSDIE YKYTRRARTS GAPAVATAAA TNAAYIPAPP NAAVGEVNRE QQQGFKREAN 60 HHMSIANITR IIRRVLPANA EITDDAKEAI QECISEFIRV ITAEANVRCH REYRKTVMPE 120 DVLAAMASLG LENYLEPLTT FLNKHRAQQD PERNSMNQIL QFVRRGNTGG GDNSNGFVHP 180 QQQLGDQMVQ SPPPTATAST LGYYVHLPPP PFATVEDEEE R |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 2e-34 | 57 | 146 | 7 | 96 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.K01165.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012841020.1 | 3e-76 | PREDICTED: nuclear transcription factor Y subunit beta-like | ||||
TrEMBL | A0A022QAG3 | 1e-147 | A0A022QAG3_ERYGU; Uncharacterized protein (Fragment) | ||||
STRING | Migut.K01165.1.p | 1e-164 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6044 | 4 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21970.1 | 3e-36 | NF-YB family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.K01165.1.p |