PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.K01001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 132aa MW: 14619.8 Da PI: 8.6223 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 65.8 | 4.4e-21 | 2 | 42 | 11 | 51 |
HHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 11 vtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 v fskRr g++KKA+ELSvLCd++va i fs++gkly y+s Migut.K01001.1.p 2 VCFSKRRSGLIKKAKELSVLCDVDVATIFFSKSGKLYQYCS 42 89*************************************96 PP | |||||||
2 | K-box | 17.3 | 1.9e-07 | 85 | 128 | 27 | 70 |
K-box 27 eienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKn 70 ++ L++ R l ++++Ls+ +L L++q e +l +i s+K+ Migut.K01001.1.p 85 RNGLLRNFARDLNEACIDELSVTDLILLQKQTEAALIQISSTKM 128 677888889999999**************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 20.1 | 1 | 44 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.6E-20 | 1 | 40 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.3E-12 | 2 | 43 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.06E-20 | 2 | 54 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.2E-15 | 6 | 21 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.2E-15 | 21 | 42 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 132 aa Download sequence Send to blast |
MVCFSKRRSG LIKKAKELSV LCDVDVATIF FSKSGKLYQY CSTDRIAPIL ERYRIAREQL 60 GASSTGYSEA PMGQSSEHPG FIITRNGLLR NFARDLNEAC IDELSVTDLI LLQKQTEAAL 120 IQISSTKMYS T* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.K01001.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP172242 | 4e-37 | KP172242.1 Erythranthe guttata MADS affecting flowering 465 (MAF465) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012837450.1 | 9e-89 | PREDICTED: agamous-like MADS-box protein AGL27 | ||||
TrEMBL | A0A022R3T5 | 6e-38 | A0A022R3T5_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA40 | 24 | 625 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26310.1 | 2e-19 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.K01001.1.p |