PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.K00443.2.p

Common Name

LOC105960644, MIMGU_mgv1a014582mg

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

YABBY

Protein Properties

Length: 142aa MW: 16222.3 Da PI: 10.5986

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.K00443.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	136.2	4e-42	34	113	91	170
YABBY 91 sastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 s+s+ +++++++ + ++p++ v+rPPekrqrvPsayn+fikeeiqrika+nP+ishreafs+aaknWahfP+ihfgl Migut.K00443.2.p 34 SSSKLNNKMSIQPSIPTKLPEQRTVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPEISHREAFSTAAKNWAHFPHIHFGL 113 344444444556777889999999******************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	3.3E-40	23	113	IPR006780	YABBY protein
SuperFamily	SSF47095	5.63E-8	57	106	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.0E-4	60	107	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:1902183	Biological Process	regulation of shoot apical meristem development
GO:2000024	Biological Process	regulation of leaf development

Sequence ? help Back to Top
Protein Sequence Length: 142 aa Download sequence Send to blast
MASTFHPFWP DHHLLHQAPN YNSSSEYKVD LGGSSSKLNN KMSIQPSIPT KLPEQRTVNR 60 PPEKRQRVPS AYNQFIKEEI QRIKANNPEI SHREAFSTAA KNWAHFPHIH FGLMLETTNQ 120 TAKLNEGSEK HKMRRAAIVN K*

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.K00443.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012840285.1	1e-102	PREDICTED: axial regulator YABBY 5
Swissprot	Q8GW46	4e-43	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A022R5T5	1e-100	A0A022R5T5_ERYGU; Uncharacterized protein
STRING	Migut.K00443.1.p	1e-101	(Erythranthe guttata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	2e-45	YABBY family protein

Link Out ? help Back to Top
Phytozome	Migut.K00443.2.p
Entrez Gene	105960644

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]